Browse Element(s) Details


Os.47792.1.S1_at

Description gb:AK072245.1
DB_XREF= gi:32982268
TID=Os.47792.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47792 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002K22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002K22, full insert sequence.
FL= gb:AK072245.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0159011/11Beta-fructofuranosidase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01560Os.12238.2.S1_x_at11/112+316594..31912840S ribosomal protein S4, putative, expressed
LOC_Os02g01560Os.12238.1.S1_at11/112+316594..31912840S ribosomal protein S4, putative, expressed
LOC_Os02g01570NANA2+321074..327184retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01580NANA2+327500..330456retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01590Os.47792.1.S1_at11/112+343057..346875Beta-fructofuranosidase 1 precursor, putative, expressed
LOC_Os02g01610Os.56725.1.S1_at11/112+349533..354294pentatricopeptide, putative, expressed
LOC_Os02g01620NANA2+355653..359764retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01630NANA2+361447..361899retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01640NANA2+362746..367311retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01649NANA2+367563..368905retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01660NANA2+370805..371257retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005773cellular_componentvacuole
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004564molecular_functionbeta-fructofuranosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47792.1.S1_at--134--7711Chr02:346317..346341 (25 bp)
GGGTGCTCGTCGACCACTCCATCGT
LOC_Os02g01590
Os.47792.1.S1_at--916--7711Chr02:346383..346407 (25 bp)
GGGTGTACCCCACGGAGGCCATCTA
LOC_Os02g01590
Os.47792.1.S1_at--1004--1651Chr02:346445..346469 (25 bp)
AGCGCGCGCGTCACGGCCAAGAAGC
LOC_Os02g01590
Os.47792.1.S1_at--1102--7191Chr02:346472..346496 (25 bp)
GTCGTCCACGAGATGGACTCCTCCT
LOC_Os02g01590
Os.47792.1.S1_at--286--6011Chr02:346481..346505 (25 bp)
GAGATGGACTCCTCCTACAACCAAG
LOC_Os02g01590
Os.47792.1.S1_at--934--9871Chr02:346508..346532 (25 bp)
TACATGGCCTAGACTCCTCTCTTCT
LOC_Os02g01590
Os.47792.1.S1_at--415--3591Chr02:346560..346584 (25 bp)
CATTATTGCTGCTTACTTGTAAATC
LOC_Os02g01590
Os.47792.1.S1_at--60--8751Chr02:346577..346601 (25 bp)
TGTAAATCATTTTTGACGCCGCCGC
LOC_Os02g01590
Os.47792.1.S1_at--528--4711Chr02:346614..346638 (25 bp)
GCTGGCCTGGCCTTCAGAATTTTAT
LOC_Os02g01590
Os.47792.1.S1_at--527--8431Chr02:346622..346646 (25 bp)
GGCCTTCAGAATTTTATCTCTTTGC
LOC_Os02g01590
Os.47792.1.S1_at--52--5231Chr02:346630..346654 (25 bp)
GAATTTTATCTCTTTGCTTCTTTTT
LOC_Os02g01590
Target Sequence 
GGGTGCTCGTCGACCACTCCATCGTCGAGAGCTTCGCGCAGGGGGGGAGGTCCACGGCGACGTCGCGGGTGTACCCCACG
GAGGCCATCTACGCCAACGCCGGCGTCTTCCTCTTCAACAACGCCACCAGCGCGCGCGTCACGGCCAAGAAGCTCGTCGT
CCACGAGATGGACTCCTCCTACAACCAAGCCTACATGGCCTAGACTCCTCTCTTCTTCTTCTTCTTCTTCTTCTCCATTA
TTACATTATTGCTGCTTACTTGTAAATCATTTTTGACGCCGCCGCCTGCTGCTAGCTGCTGGCCTGGCCTTCAGAATTTT
ATCTCTTTGCTTCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis