Browse Element(s) Details


Os.48585.1.S1_at

Description gb:AK070070.1
DB_XREF= gi:32980094
TID=Os.48585.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48585 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023044M12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023044M12, full insert sequence.
FL= gb:AK070070.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0424011/11transcription initiation factor IIE, alpha subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04220Os.27960.1.S1_a_at10/1111+1717965..1734148HEAT repeat family protein, expressed
LOC_Os11g04230OsAffx.30810.1.S1_s_at1/1111+1737841..1740887transcription initiation factor IIE, putative
LOC_Os11g04240Os.48585.1.S1_at11/1111+1743100..1747825transcription initiation factor IIE, alpha subunit, putative, expressed
LOC_Os11g04280OsAffx.30811.2.S1_at11/1111+1751235..1751891Zinc finger, C3HC4 type family protein
LOC_Os11g04270OsAffx.6990.1.S1_at9/1111+1752627..1754453hypothetical protein
LOC_Os11g04260OsAffx.6989.1.S1_at11/1111+1755947..1757800hypothetical protein
LOC_Os11g04267OsAffx.6989.1.S1_at11/1111+1767459..1769312hypothetical protein
LOC_Os11g04274OsAffx.6990.1.S1_at10/1111+1770806..1772632hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005673cellular_componenttranscription factor TFIIE complex
GO:0016986molecular_functiontranscription initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48585.1.S1_at--892--9771Chr11:1747281..1747305 (25 bp)
TAACGTTGTAGCTGTAGTCTCCTTC
LOC_Os11g04240
Os.48585.1.S1_at--1088--6931Chr11:1747294..1747318 (25 bp)
GTAGTCTCCTTCTTTCTTGATGTTT
LOC_Os11g04240
Os.48585.1.S1_at--359--3171Chr11:1747337..1747361 (25 bp)
AATTGCATGTCCTTTTGTCTTAGTA
LOC_Os11g04240
Os.48585.1.S1_at--237--2491Chr11:1747375..1747399 (25 bp)
AACATGGTCTGGTACTTTTCCTGTC
LOC_Os11g04240
Os.48585.1.S1_at--101--10351Chr11:1747423..1747447 (25 bp)
TTTACTTGCAGTTCAGTTAGCCACT
LOC_Os11g04240
Os.48585.1.S1_at--16--6791Chr11:1747438..1747462 (25 bp)
GTTAGCCACTGAAATGATCTGATCT
LOC_Os11g04240
Os.48585.1.S1_at--1144--9551Chr11:1747532..1747556 (25 bp)
TCTTAACATGTTGCCTTTGACTGAT
LOC_Os11g04240
Os.48585.1.S1_at--1155--10371Chr11:1747654..1747678 (25 bp)
TTTTGAGACCCAAGCGTGATCAGAT
LOC_Os11g04240
Os.48585.1.S1_at--26--3091Chr11:1747729..1747753 (25 bp)
AATACGAATTTTGCCCTTTCTGCCT
LOC_Os11g04240
Os.48585.1.S1_at--229--5991Chr11:1747768..1747792 (25 bp)
GAGACAAAGCCATTTCTGCGTTTTC
LOC_Os11g04240
Os.48585.1.S1_at--1151--9131Chr11:1747784..1747808 (25 bp)
TGCGTTTTCGCCTTATGTGTCTATA
LOC_Os11g04240
Target Sequence 
TAACGTTGTAGCTGTAGTCTCCTTCTTTCTTGATGTTTCTAAACTCCTAGTTATCTAATTGCATGTCCTTTTGTCTTAGT
ATAATAGAAAAAGAAACATGGTCTGGTACTTTTCCTGTCTTGTAAATGATATTACCACCATATTTACTTGCAGTTCAGTT
AGCCACTGAAATGATCTGATCTGTATGAATTCCATGATGAGTTATAGAACGTTTGTAACTGAAATTTAATAGATGGGGGT
ATATCTTATGTTCTTAACATGTTGCCTTTGACTGATGTATCATAAATGTGTTGGGCATGGATCTAACATATTTAAACTAA
TACAGGGAACAAGCTTGAGAGATGTGCTATATATGCGAACAAGCAGACTAGAATTTTGAGACCCAAGCGTGATCAGATGG
TGATGAAGACTTTATAGATGGTGATGATATAGATATGTAAATCATGTAAATACGAATTTTGCCCTTTCTGCCTTTCTTTT
TTTTTCGAGACAAAGCCATTTCTGCGTTTTCGCCTTATGTGTCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis