Browse Element(s) Details


Os.49256.1.S1_at

Description gb:AK106413.1
DB_XREF= gi:32991622
TID=Os.49256.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49256 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-A03, full insert sequence.
FL= gb:AK106413.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1449011/114'-phosphopantetheinyl transferase superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14450Os.27634.1.S1_at11/118+8671612..8675214Sigma-70 region 2 family protein, expressed
LOC_Os08g14460Os.47334.1.S1_at11/118+8675237..8680095expressed protein
LOC_Os08g14470NANA8+8683308..8689463transposon protein, putative, unclassified
LOC_Os08g14480NANA8+8690093..8693327transposon protein, putative, unclassified
LOC_Os08g14490Os.49256.1.S1_at11/118+8697456..87025984'-phosphopantetheinyl transferase superfamily protein, expressed
LOC_Os08g14500OsAffx.16995.1.S1_at11/118+8709387..8709593hypothetical protein
LOC_Os08g14510NANA8+8718621..8719049hypothetical protein
LOC_Os08g14520OsAffx.15648.1.S1_at1/118+8719416..8720482hypothetical protein
LOC_Os08g14530NANA8+8725622..8732365retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49256.1.S1_at--418--8151Chr08:8702058..8702082 (25 bp)
GGAAACTCTAGTATTCTTCGATCGT
LOC_Os08g14490
Os.49256.1.S1_at--620--1171Chr08:8702087..8702111 (25 bp)
AGTAATGCCTGACATTGCGTGCTCG
LOC_Os08g14490
Os.49256.1.S1_at--451--2291Chr08:8702124..8702148 (25 bp)
AAATGCAACACCGTTTTCTCCAGAT
LOC_Os08g14490
Os.49256.1.S1_at--522--10591Chr08:8702139..8702163 (25 bp)
TTCTCCAGATTCATACTTCGGTTAT
LOC_Os08g14490
Os.49256.1.S1_at--87--1671Chr08:8702179..8702203 (25 bp)
AGCCTGCCGCATAAACATGTTTTCC
LOC_Os08g14490
Os.49256.1.S1_at--607--7091Chr08:8702240..8702264 (25 bp)
GTCAACACTAGTACAAGCTGGCATG
LOC_Os08g14490
Os.49256.1.S1_at--929--1411Chr08:8702274..8702298 (25 bp)
AGAAATTTCACCATCTACTCGCAAG
LOC_Os08g14490
Os.49256.1.S1_at--177--9911Chr08:8702289..8702313 (25 bp)
TACTCGCAAGATTGAAGCCCCACTT
LOC_Os08g14490
Os.49256.1.S1_at--682--2611Chr08:8702303..8702327 (25 bp)
AAGCCCCACTTTGCAAACACGATTG
LOC_Os08g14490
Os.49256.1.S1_at--510--1131Chr08:8702389..8702413 (25 bp)
AGTGCTCTGTGTTTTGTGTTATTAC
LOC_Os08g14490
Os.49256.1.S1_at--950--9771Chr08:8702426..8702450 (25 bp)
TAAGATGTGCTCCTGCCAAGTTAAT
LOC_Os08g14490
Target Sequence 
GGAAACTCTAGTATTCTTCGATCGTTATTAGTAATGCCTGACATTGCGTGCTCGGGAGGACCTAGGAAATGCAACACCGT
TTTCTCCAGATTCATACTTCGGTTATTAGTTCCCACTTCCCAGCCTGCCGCATAAACATGTTTTCCGAAGGAACAACCAT
CATTTTTACTGATTGGAAGGATGTCAACACTAGTACAAGCTGGCATGTTGAAAGCTAGAAATTTCACCATCTACTCGCAA
GATTGAAGCCCCACTTTGCAAACACGATTGCATTCCAGGTTAAAGAGTTGTTTGTATTTGTCACTATTAGAGCTTAGAGA
ATAGGAATAGGAGTGCTCTGTGTTTTGTGTTATTACATTGGATTGGAATAAGATGTGCTCCTGCCAAGTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis