Browse Element(s) Details


Os.49382.1.S1_at

Description gb:AK120921.1
DB_XREF= gi:37990544
TID=Os.49382.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49382 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023035D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035D12, full insert sequence.
FL= gb:AK120921.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3090010/11Serine/threonine-protein kinase RLCKVII, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30880NANA2+18421042..18426637retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g30890NANA2+18429233..18429433hypothetical protein
LOC_Os02g30900Os.49382.1.S1_at10/112+18440134..18444624Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os02g30910Os.16044.1.S1_at11/112+18448539..18451267nodulin MtN3 family protein, putative, expressed
LOC_Os02g30920NANA2+18463256..18464808hypothetical protein
LOC_Os02g30930OsAffx.12300.1.S1_at11/112+18468625..18470220hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005792cellular_componentmicrosome
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49382.1.S1_at--752--4291Chr02:18444038..18444062 (25 bp)
CCTAATGCGGCTCATGCTTCAAGAA
LOC_Os02g30900
Os.49382.1.S1_at--1001--2651Chr02:18444062..18444086 (25 bp)
AAGCCAGGTGGCGATCAGCGAAGCA
LOC_Os02g30900
Os.49382.1.S1_at--1140--1431Chr02:18444096..18444120 (25 bp)
AGAACGGCAGGGTAGTCTCCAGGAA
LOC_Os02g30900
Os.49382.1.S1_at--736--9491Chr02:18444111..18444135 (25 bp)
TCTCCAGGAACGACGAAGCCAGCAG
LOC_Os02g30900
Os.49382.1.S1_at--130--5071Chr02:18444132..18444156 (25 bp)
GCAGCTCTGGCCACAAGTCACCAAA
LOC_Os02g30900
Os.49382.1.S1_at--840--7391Chr02:18444379..18444403 (25 bp)
GGATTCCCCAACTGAAAATGGCTAG
LOC_Os02g30900
Os.49382.1.S1_at--606--7911Chr02:18444420..18444444 (25 bp)
GGTTGATCCATCCACCCATGTATGT
LOC_Os02g30900
Os.49382.1.S1_at--982--3351Chr02:18444432..18444456 (25 bp)
CACCCATGTATGTCTGTTTATTTCC
LOC_Os02g30900
Os.49382.1.S1_at--662--2471Chr02:18444457..18444481 (25 bp)
AACACTATTTGCTTTCCTGTGGCAG
LOC_Os02g30900
Os.49382.1.S1_at--504--1411Chr02:18444538..18444562 (25 bp)
AGAAACGGGAGCTTTGAACTGGATA
LOC_Os02g30900
Os.49382.1.S1_at--942--8951Chr02:18444612..18444636 (25 bp)
TGAAAGGACACTTTTGAGTTCCCTT
NONE
Target Sequence 
CCTAATGCGGCTCATGCTTCAAGAAAGCCAGGTGGCGATCAGCGAAGCAAGGTTGGCGAGAACGGCAGGGTAGTCTCCAG
GAACGACGAAGCCAGCAGCTCTGGCCACAAGTCACCAAACAAGGACAGGGAGGATTCCCCGAAAGAGCCCCCAGGTATCC
TGAACAAGGATTTCGACAGGGAGCGGATGGTGGCGGAGGCAAAGATGTGGGGCGACAGGGAACGGATGGTGGCTGAGNCA
AAGATNTGGGGTGATAGGGAGCGGNTGGTAGCCGAGNCAAAGATGTGGGGCGAGAATTGGCGGGATAAGAGACGTGCGAT
CGAGAACGGGCAGGGGAGTCTGGATTCCCCAACTGAAAATGGCTAGGAGCAGGGCAGCGAGGGGTTGATCCATCCACCCA
TGTATGTCTGTTTATTTCCAACACTATTTGCTTTCCTGTGGCAGGGAGAGGGGAGGGAGGGACGGTGGGTTANATGTACA
TTTCTAGAGAAAAAGAGAGAAGAAACGGGAGCTTTGAACTGGATAGNGAATTCATGTTGTTGTACTTGTAAATTCTCAGA
AATTTTTGTGAGAATGAAAGGACACTTTTGAGTTCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis