Browse Element(s) Details


Os.49459.1.S1_at

Description gb:AK101586.1
DB_XREF= gi:32986795
TID=Os.49459.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49459 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033050P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050P15, full insert sequence.
FL= gb:AK101583.1 gb:AK101586.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g181709/11phospholipid hydroperoxide glutathione peroxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18140OsAffx.7139.1.S1_at11/1111+10185095..10193589carboxyl-terminal proteinase, putative, expressed
LOC_Os11g18160OsAffx.7140.1.S1_at11/1111+10199208..10201463hypothetical protein
LOC_Os11g18160OsAffx.13906.1.S1_at1/1111+10199208..10201463hypothetical protein
LOC_Os11g18170Os.49459.1.S1_at9/1111+10208348..10210791phospholipid hydroperoxide glutathione peroxidase, putative, expressed
LOC_Os11g18194OsAffx.31037.1.S1_x_at11/1111+10213730..10245275Cycloartenol synthase, putative, expressed
LOC_Os11g18194OsAffx.7141.1.S1_at11/1111+10213730..10245275Cycloartenol synthase, putative, expressed
LOC_Os11g18194Os.53034.1.A1_at11/1111+10213730..10245275Cycloartenol synthase, putative, expressed
LOC_Os11g18194OsAffx.18914.1.S1_x_at4/1111+10213730..10245275Cycloartenol synthase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0004602molecular_functionglutathione peroxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49459.1.S1_at--922--3351Chr11:10209553..10209577 (25 bp)
CACCTTTACTCTTTTGTAGTGGCTT
LOC_Os11g18170
Os.49459.1.S1_at--409--10771Chr11:10209365..10209389 (25 bp)
TTGAGATACTCGCATTTCCGTGCAA
LOC_Os11g18170
Os.49459.1.S1_at--848--10651Chr11:10209350..10209374 (25 bp)
TTCCGTGCAACCAATTTGCTGGTCA
LOC_Os11g18170
Os.49459.1.S1_at--271--4231Chr11:10208674..10208698 (25 bp)
CCGCACCGCTATACAAGTTCTTGAA
LOC_Os11g18170
Os.49459.1.S1_at--418--7511Chr11:10208638..10208662 (25 bp)
GTGGATTCCTTGGTGATGGCATCAA
LOC_Os11g18170
Os.49459.1.S1_at--1107--5471Chr11:10208610..10208634 (25 bp)
GAACTTCACGAAGTTTCTCGTTGGT
LOC_Os11g18170
Os.49459.1.S1_at--282--1011Chr11:10208575..10208599 (25 bp)
AGGTTGTTGAGCGATATGCCCCGAC
LOC_Os11g18170
Os.49459.1.S1_at--820--4151Chr11:10208556..10208580 (25 bp)
CCCGACGACTTCTCCATTAAAGATT
LOC_Os11g18170
Os.49459.1.S1_at--514--5391Chr11:10208436..10208460 (25 bp)
GAAGCTACTTGGGACCTCGTAACTT
LOC_Os11g18170
Os.49459.1.S1_at--1124--2971Chr11:10208342..10208366 (25 bp)
AATGTGGTTTGCTTCTTTTAGACGC
NONE
Os.49459.1.S1_at--1028--10491Chr11:10208275..10208299 (25 bp)
TTAATCTCGATGTTGTCAGGTGACC
NONE
Target Sequence 
CACCTTTACTCTTTTGTAGTGGCTTAACAAATTCCAATTACAAGGAGTTGAATGTCTTGTACGAGAAATACAAAGAAAAA
GGCCTTGAGATACTCGCATTTCCGTGCAACCAATTTGCTGGTCAAGAGCCTGGCAGCAATGAAGAGATTGAGCAAACAGT
TTGTACCAGATTCAAAGCAGAATTTCCTATTTTTGACAAGATTGATGTTAACGGGAAGGAGGCCGCACCGCTATACAAGT
TCTTGAAATCACAGAAAGGTGGATTCCTTGGTGATGGCATCAAATGGAACTTCACGAAGTTTCTCGTTGGTAAAGATGGC
AAGGTTGTTGAGCGATATGCCCCGACGACTTCTCCATTAAAGATTGAGAATGATATCCAGAAGCTACTTGGGACCTCGTA
ACTTATTAACACGGAACACATATGTGTATGTCATATGTTGTATAATTGTTTGAAAATTTGTCTATGTTCGTAAGAATGTG
GTTTGCTTCTTTTAGACGCAGAAAATGTTCTTTGTGCATTACAACTATTCTGGAGTAGGAATTAATCTCGATGTTGTCAG
GTGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis