Browse Element(s) Details


Os.4960.1.S1_at

Description gb:AK070619.1
DB_XREF= gi:32980643
TID=Os.4960.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4960 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0001B06.29 (P0001B06.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062L17, full insert sequence.
FL= gb:AK070619.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0989011/11density-regulated protein DRP1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09860Os.32248.2.S1_x_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09860Os.32248.1.S1_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09860Os.32248.1.S1_a_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09870NANA1+5124951..5125409expressed protein
LOC_Os01g09880OsAffx.23175.1.S1_x_at11/111+5128418..5129675Harpin-induced protein 1 containing protein, expressed
LOC_Os01g09880Os.39373.1.A1_at3/111+5128418..5129675Harpin-induced protein 1 containing protein, expressed
LOC_Os01g09890Os.4960.1.S1_at11/111+5135279..5137727density-regulated protein DRP1 containing protein, expressed
LOC_Os01g09890Os.4960.1.S1_s_at10/111+5135279..5137727density-regulated protein DRP1 containing protein, expressed
LOC_Os01g09900OsAffx.23176.1.S1_x_at11/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09900OsAffx.23176.1.S1_at11/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09900OsAffx.23176.3.S1_x_at1/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09914NANA1+5155475..5155755NA
LOC_Os01g09930OsAffx.23176.3.S1_x_at11/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g09930Os.32770.1.S1_x_at4/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g09930Os.32770.2.S1_x_at3/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g09930OsAffx.23176.1.S1_x_at3/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4960.1.S1_at--1039--5331Chr01:5136690..5136714 (25 bp)
GAAGATTGTCCGCAACAAGCGCAAA
LOC_Os01g09890
Os.4960.1.S1_at--332--3251Chr01:5136675..5136699 (25 bp)
CAAGCGCAAATGTGTTACTGTGGTG
LOC_Os01g09890
Os.4960.1.S1_at--328--4591Chr01:5136672..5136696 (25 bp)
GCGCAAATGTGTTACTGTGGTGAAG
LOC_Os01g09890
Os.4960.1.S1_at--545--3131Chr01:5136449..5136664 (25 bp)
AATTATTTGGTGTCAAGCTGAGTGA
LOC_Os01g09890
Os.4960.1.S1_at--958--10191Chr01:5136446..5136502 (25 bp)
TATTTGGTGTCAAGCTGAGTGATGC
LOC_Os01g09890
Os.4960.1.S1_at--422--6811Chr01:5135428..5135452 (25 bp)
GTTTTCTTTCATTTCTGGTCTTAAG
LOC_Os01g09890
Os.4960.1.S1_at--557--9551Chr01:5135424..5135448 (25 bp)
TCTTTCATTTCTGGTCTTAAGTTCA
LOC_Os01g09890
Os.4960.1.S1_at--61--371Chr01:5135400..5135424 (25 bp)
ATCACAACTGGTGTTTTATCGAGGA
LOC_Os01g09890
Os.4960.1.S1_at--1018--1951Chr01:5135394..5135418 (25 bp)
ACTGGTGTTTTATCGAGGACTGGTC
LOC_Os01g09890
Os.4960.1.S1_at--543--7411Chr01:5135390..5135414 (25 bp)
GTGTTTTATCGAGGACTGGTCCCAT
LOC_Os01g09890
Os.4960.1.S1_at--974--10331Chr01:5135386..5135410 (25 bp)
TTTATCGAGGACTGGTCCCATGTGT
LOC_Os01g09890
Target Sequence 
GAAGATTGTCCGCAACAAGCGCAAATGTGTTACTGTGGTGAAGGGTCTGGAATTATTTGGTGTCAAGCTGAGTGATGCTT
CAAAGAAGCTGGGGAAGAAGTTTGCTACAGGAGCATCTGTTGTTAAGGGCCCCACTGAGAAGGAGCAAATTGATGTGCAA
GGGGATATATCGTATGATATCGTGGAGTTCATTACAGATACTTGGCCTGATGTACCTGAGTCAGCCATTTTTTTCATTNA
AGATGGAAGGAAGGTTCCTGCTGCTTGATGTTTTATGGCCACAAGGCAGAATACCAATGGAGTTACAAATATAGTAGAAA
TATAAGACAAGAGTATGCCTGCAGCTAAGGCATGGGCCTTGCATGAGCTCATCAATGCTACTACTCCTTCAAAGACAAAA
AACTGTTTTCTTTCATTTCTGGTCTTAAGTTCATCACAACTGGTGTTTTATCGAGGACTGGTCCCATGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis