Browse Element(s) Details


Os.4960.1.S1_s_at

Description gb:AK070619.1
DB_XREF= gi:32980643
TID=Os.4960.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4960 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0001B06.29 (P0001B06.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062L17, full insert sequence.
FL= gb:AK070619.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0989010/11density-regulated protein DRP1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09860Os.32248.2.S1_x_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09860Os.32248.1.S1_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09860Os.32248.1.S1_a_at11/111+5106751..5113183protein kinase family protein, putative, expressed
LOC_Os01g09870NANA1+5124951..5125409expressed protein
LOC_Os01g09880OsAffx.23175.1.S1_x_at11/111+5128418..5129675Harpin-induced protein 1 containing protein, expressed
LOC_Os01g09880Os.39373.1.A1_at3/111+5128418..5129675Harpin-induced protein 1 containing protein, expressed
LOC_Os01g09890Os.4960.1.S1_at11/111+5135279..5137727density-regulated protein DRP1 containing protein, expressed
LOC_Os01g09890Os.4960.1.S1_s_at10/111+5135279..5137727density-regulated protein DRP1 containing protein, expressed
LOC_Os01g09900OsAffx.23176.1.S1_x_at11/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09900OsAffx.23176.1.S1_at11/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09900OsAffx.23176.3.S1_x_at1/111+5145614..5147143Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09914NANA1+5155475..5155755NA
LOC_Os01g09930OsAffx.23176.3.S1_x_at11/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g09930Os.32770.1.S1_x_at4/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g09930Os.32770.2.S1_x_at3/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g09930OsAffx.23176.1.S1_x_at3/111+5160093..5165226Helix-loop-helix DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.4960.1.S1_s_at--1006--8031Chr01:5136225..5136249 (25 bp)
GGAGTTCATTACAGATACTTGGCCT
LOC_Os01g09890
Os.4960.1.S1_s_at--619--6471NONE
GATACTTGGCCTGATGTACCTGAGT
NONE
Os.4960.1.S1_s_at--822--6271Chr01:5135624..5135645 (22 bp)
GATGTACCTGAGTCAGCCATTTTTT
LOC_Os01g09890
Os.4960.1.S1_s_at--249--2931Chr01:5135586..5135610 (25 bp)
AAGGAAGGTTCCTGCTGCTTGATGT
LOC_Os01g09890
Os.4960.1.S1_s_at--405--4771Chr01:5135573..5135597 (25 bp)
GCTGCTTGATGTTTTATGGCCACAA
LOC_Os01g09890
Os.4960.1.S1_s_at--881--3291Chr01:5135553..5135577 (25 bp)
CACAAGGCAGAATACCAATGGAGTT
LOC_Os01g09890
Os.4960.1.S1_s_at--514--9771Chr01:5135510..5135534 (25 bp)
TAAGACAAGAGTATGCCTGCAGCTA
LOC_Os01g09890
Os.4960.1.S1_s_at--993--9171Chr01:5135497..5135521 (25 bp)
TGCCTGCAGCTAAGGCATGGGCCTT
LOC_Os01g09890
Os.4960.1.S1_s_at--730--791Chr01:5135481..5135505 (25 bp)
ATGGGCCTTGCATGAGCTCATCAAT
LOC_Os01g09890
Os.4960.1.S1_s_at--198--10731Chr01:5135474..5135498 (25 bp)
TTGCATGAGCTCATCAATGCTACTA
LOC_Os01g09890
Os.4960.1.S1_s_at--290--4911Chr01:5135287..5135311 (25 bp)
GCTTCATATTTAACGACATGCAAAG
LOC_Os01g09890
Target Sequence
GGAGTTCATTACAGATACTTGGCCTGATGTACCTGAGTCAGCCATTTTTTTCATTNAAGATGGAAGGAAGGTTCCTGCTG
CTTGATGTTTTATGGCCACAAGGCAGAATACCAATGGAGTTACAAATATAGTAGAAATATAAGACAAGAGTATGCCTGCA
GCTAAGGCATGGGCCTTGCATGAGCTCATCAATGCTACTACTCCTTCAAAGACAAAAAACTGTTTTCTTTCATTTCTGGT
CTTAAGTTCATCACAACTGGTGTTTTATCGAGGACTGGTCCCATGTGTATCAACTTTATCCTGCAAGTTAGTTTGGTATT
GCTAAGCCATTGGAAGTGGCAAATGTTTTGTGCGAGCATCAGGCTTCATATTTAACGACATGCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4960.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis