Browse Element(s) Details


Os.52713.1.S1_at

Description gb:AK068878.1
DB_XREF= gi:32978903
TID=Os.52713.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52713 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023001K02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001K02, full insert sequence.
FL= gb:AK068878.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0797011/11Anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
LOC_Os05g451102/11UDP-glucoronosyl and UDP-glucosyl transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07530NANA10+3997301..4000226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g07966OsAffx.18918.1.S1_at1/1110+4009275..4011681hypothetical protein
LOC_Os10g07970Os.52713.1.S1_at11/1110+4017434..4019100Anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
LOC_Os10g07974NANA10+4025454..4026478hypothetical protein
LOC_Os10g07978Os.15498.1.S1_at11/1110+4028589..4032507NB-ARC domain containing protein, expressed
LOC_Os10g07982NANA10+4038971..4039291hypothetical protein
LOC_Os10g07986NANA10+4041940..4042533hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52713.1.S1_at--185--591Chr10:4018756..4018780 (25 bp)
ATGCCGTCAAGGAAGGTGGGTCTTC
LOC_Os10g07970
Os.52713.1.S1_at--1069--7812Chr10:4018774..4018798 (25 bp)
GGTCTTCTGAAGTGGCATTTGATGA
LOC_Os10g07970
Os.52713.1.S1_at--862--2772Chr10:4018818..4018842 (25 bp)
AAGAGCAGCTTGGAGAATGGCGTTT
LOC_Os10g07970
Os.52713.1.S1_at--644--5291Chr10:4018832..4018856 (25 bp)
GAATGGCGTTTGTAGCTGATCAAGC
LOC_Os10g07970
Os.52713.1.S1_at--392--4751Chr10:4018846..4018870 (25 bp)
GCTGATCAAGCAGAGTTACGCTCAT
LOC_Os10g07970
Os.52713.1.S1_at--945--6771Chr10:4018860..4018884 (25 bp)
GTTACGCTCATGACCGAATAGAAAT
LOC_Os10g07970
Os.52713.1.S1_at--356--7911Chr10:4018920..4018943 (24 bp)
GGTTGGCGTAACTGAGGACTCTGCA
LOC_Os10g07970
Os.52713.1.S1_at--120--6191Chr10:4018932..4018956 (25 bp)
GAGGACTCTGCATAACTGTATTGGT
LOC_Os10g07970
Os.52713.1.S1_at--981--2551Chr10:4018945..4018969 (25 bp)
AACTGTATTGGTGCATCAATGCGTA
LOC_Os10g07970
Os.52713.1.S1_at--829--4358Chr10:4019011..4019035 (25 bp)
CCACCCCAAATATCACTCTAAGTTT
LOC_Os10g07970
Os.52713.1.S1_at--227--1273Chr10:4019055..4019079 (25 bp)
AGATTTGTTGCAAATTCCCACCTCC
LOC_Os10g07970
Target Sequence 
ATGCCGTCAAGGAAGGTGGGTCTTCTGAAGTGGCATTTGATGAGTTCATGAGAGATTTGGAGAAGAGCAGCTTGGAGAAT
GGCGTTTGTAGCTGATCAAGCAGAGTTACGCTCATGACCGAATAGAAATGGTGATGGTTTCTTGATTCCATTTTTTTTTT
TAAGGTTGGCGTAACTGAGGACTCTGCATAACTGTATTGGTGCATCAATGCGTAGCTGATGGGTGGGGGCTAACAGAAAG
GAAAAATTTCAAAAACCACCCCAAATATCACTCTAAGTTTAAGATGCCCCCCTATAAGAAGATTTGTTGCAAATTCCCAC
CTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52713.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis