Browse Element(s) Details


Os.53254.1.S1_at

Description gb:AK071601.1
DB_XREF= gi:32981624
TID=Os.53254.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53254 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023102C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023102C01, full insert sequence.
FL= gb:AK071601.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g122101/11bHLH family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12190NANA6+6533747..6534898Glutaredoxin family protein, expressed
LOC_Os06g12200OsAffx.4810.1.S1_at11/116+6536950..6537799hypothetical protein
LOC_Os06g12210Os.53254.1.S1_at1/116+6555803..6556320bHLH family protein, putative, expressed
LOC_Os06g12220Os.7811.1.S1_at11/116+6558755..6562367HVA22-like protein a, putative, expressed
LOC_Os06g12230Os.49501.1.A1_at11/116+6570019..6571670TCP family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53254.1.S1_at--1094--9491Chr06:6556250..6556274 (25 bp)
TCTCCGACCTCATGGCCGGCATGGA
LOC_Os06g12210
Os.53254.1.S1_at--824--3711Chr06:6556317..6556341 (25 bp)
CTAGCTCATCTCTTCTCATCTGTTC
NONE
Os.53254.1.S1_at--179--511Chr06:6556359..6556383 (25 bp)
ATCGATCTCGTGTTATTCTACGTAC
NONE
Os.53254.1.S1_at--848--8831Chr06:6556392..6556416 (25 bp)
TGATATGAATGCAGCTCGTGCCCTG
NONE
Os.53254.1.S1_at--375--3791Chr06:6556406..6556430 (25 bp)
CTCGTGCCCTGTAGCTACGTATAAA
NONE
Os.53254.1.S1_at--982--251Chr06:6556464..6556488 (25 bp)
ATATGCATATGCCTAGATCTGATCT
NONE
Os.53254.1.S1_at--684--6951Chr06:6556495..6556519 (25 bp)
GTAGAAAATCTACTCATCTCGGTGT
NONE
Os.53254.1.S1_at--504--3731Chr06:6556504..6556528 (25 bp)
CTACTCATCTCGGTGTACTACTGAT
NONE
Os.53254.1.S1_at--497--6551Chr06:6556538..6556562 (25 bp)
GATTAAGGCATGCAGCTGGCTTGAT
NONE
Os.53254.1.S1_at--660--4711Chr06:6556552..6556576 (25 bp)
GCTGGCTTGATGATCGGTACTACTA
NONE
Os.53254.1.S1_at--718--7551Chr06:6556622..6556646 (25 bp)
GGGCCGGCTGCCTAATTAAGTAATT
NONE
Target Sequence 
TCTCCGACCTCATGGCCGGCATGGATCACAACAGCCCAGGCGCCGAGATCATCCGCAGCCTCCTCCGCTAGCTCATCTCT
TCTCATCTGTTCTTCCTCCTCGATGATCGATCGATCTCGTGTTATTCTACGTACATGAAGGATGATATGAATGCAGCTCG
TGCCCTGTAGCTACGTATAAATATACACATATGTATACATGCATACAGTACATGATATGCATATGCCTAGATCTGATCTA
GCTCAGTAGAAAATCTACTCATCTCGGTGTACTACTGATGATGATGATGATTAAGGCATGCAGCTGGCTTGATGATCGGT
ACTACTACTACTACTTCACTTCAGTTCAGTAGGGGCATTAGCTAGCTAGCTAGGGCCGGCTGCCTAATTAAGTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53254.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis