Browse Element(s) Details


Os.54059.1.S1_at

Description gb:AK103398.1
DB_XREF= gi:32988607
TID=Os.54059.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54059 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033127N14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127N14, full insert sequence.
FL= gb:AK103398.1 gb:AK101624.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2798011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g27940NANA6+15852050..15854500retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27950NANA6+15854843..15857764retrotransposon protein, putative, unclassified
LOC_Os06g27960OsAffx.15635.1.S1_at11/116+15859646..15859909hypothetical protein
LOC_Os06g27970OsAffx.27841.1.S1_s_at10/116+15862236..15871575Wilms' tumor 1-associating protein, putative, expressed
LOC_Os06g27980Os.54059.1.S1_at11/116+15876893..15878566expressed protein
LOC_Os06g27990Os.52447.1.S1_x_at1/116+15881630..15886247retrotransposon, putative, centromere-specific
LOC_Os06g27990OsAffx.25367.1.S1_at1/116+15881630..15886247retrotransposon, putative, centromere-specific
LOC_Os06g28000Os.14208.1.S1_at11/116+15890358..15894672Carboxyl-terminal proteinase, putative, expressed
LOC_Os06g28010NANA6+15900365..15901077retrotransposon, putative, centromere-specific
LOC_Os06g28020NANA6+15902547..15904690retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54059.1.S1_at--146--8531Chr06:15878190..15878214 (25 bp)
TGGACCTGCAGATGCTGGACTTCGT
LOC_Os06g27980
Os.54059.1.S1_at--743--8511Chr06:15878205..15878229 (25 bp)
TGGACTTCGTGCTCTTCGACTGGGA
LOC_Os06g27980
Os.54059.1.S1_at--214--9471Chr06:15878256..15878280 (25 bp)
TCTGGGTGGACAAGTTCGCCTGCGC
LOC_Os06g27980
Os.54059.1.S1_at--555--9871Chr06:15878300..15878324 (25 bp)
TACATGTACATGTTCCTCCAGTTCC
LOC_Os06g27980
Os.54059.1.S1_at--359--1231Chr06:15878319..15878343 (25 bp)
AGTTCCGCTACAAGAAGCACCGCTG
LOC_Os06g27980
Os.54059.1.S1_at--646--7691Chr06:15878343..15878367 (25 bp)
GGGTCGTCTCCTTCAAGTCCAGGGA
LOC_Os06g27980
Os.54059.1.S1_at--649--2671Chr06:15878357..15878381 (25 bp)
AAGTCCAGGGACGAGGTCTACCTCT
LOC_Os06g27980
Os.54059.1.S1_at--1159--9351Chr06:15878391..15878415 (25 bp)
TCGAGAAGCCGCTACGCTCATGATC
LOC_Os06g27980
Os.54059.1.S1_at--744--451Chr06:15878427..15878451 (25 bp)
ATCTCTCTTAGTTACGCTGCAATGC
LOC_Os06g27980
Os.54059.1.S1_at--376--9011Chr06:15878444..15878468 (25 bp)
TGCAATGCTGCGTCTGATATGTGTT
LOC_Os06g27980
Os.54059.1.S1_at--875--9551Chr06:15878477..15878501 (25 bp)
TCTTAGTAGCTCTGATTCATCTGAC
LOC_Os06g27980
Target Sequence 
TGGACCTGCAGATGCTGGACTTCGTGCTCTTCGACTGGGACCGGGTGCTCCGCCCCGGTGGCCTCCTCTGGGTGGACAAG
TTCGCCTGCGCGCGCAAGGACCTCGACGACTACATGTACATGTTCCTCCAGTTCCGCTACAAGAAGCACCGCTGGGTCGT
CTCCTTCAAGTCCAGGGACGAGGTCTACCTCTCCGCCCTGCTCGAGAAGCCGCTACGCTCATGATCCACCAGCTCGTATC
TCTCTTAGTTACGCTGCAATGCTGCGTCTGATATGTGTTGCTGTTAATCTTAGTAGCTCTGATTCATCTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54059.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis