Browse Element(s) Details


Os.54085.1.S1_at

Description gb:AK101773.1
DB_XREF= gi:32986982
TID=Os.54085.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54085 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033064L16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033064L16, full insert sequence.
FL= gb:AK101773.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1205011/11NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g476503/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g12000Os.52223.1.S1_at11/1111+6663976..6676628NBS-LRR disease resistance protein, putative, expressed
LOC_Os11g12010Os.52020.1.S1_at11/1111+6681134..6683109expressed protein
LOC_Os11g12020NANA11+6685754..6686150NBS-LRR type disease resistance protein, putative
LOC_Os11g12030OsAffx.18813.1.S1_at11/1111+6687915..6689380hypothetical protein
LOC_Os11g12040OsAffx.7091.1.S1_at8/1111+6690946..6693393NB-ARC domain containing protein, expressed
LOC_Os11g12040Os.12614.1.A1_at1/1111+6690946..6693393NB-ARC domain containing protein, expressed
LOC_Os11g12050Os.54085.1.S1_at11/1111+6698615..6704342NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g12060OsAffx.22947.1.S1_x_at1/1111+6708072..6712523retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g12060Os.8606.1.S1_at1/1111+6708072..6712523retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g12070NANA11+6712808..6714073retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g12080NANA11+6724777..6727119retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0005739cellular_componentmitochondrion
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54085.1.S1_at--476--2331Chr11:6703881..6703905 (25 bp)
AAAGAAGCTCTGTTTGATGGACCTG
LOC_Os11g12050
Os.54085.1.S1_at--348--7795Chr12:25656605..25656629 (25 bp)
GGTGCCATCTACGAGACGTGGTAAC
NONE
Os.54085.1.S1_at--944--1814Chr12:25656619..25656643 (25 bp)
GACGTGGTAACTCACTTAAGGTTCG
NONE
Os.54085.1.S1_at--516--1012Chr12:25656637..25656661 (25 bp)
AGGTTCGGTGAACAGTGACATTGTA
NONE
Os.54085.1.S1_at--1088--1631Chr11:6704067..6704091 (25 bp)
AGCGTTGATGTATGATTGCTAACTC
LOC_Os11g12050
Os.54085.1.S1_at--489--6594Chr12:25656679..25656698 (20 bp)
GATTGCTAACTCGACATCATACATG
NONE
Os.54085.1.S1_at--777--5432Chr12:25656728..25656752 (25 bp)
GAACCTATAGATCATAATTTGCCAA
NONE
Os.54085.1.S1_at--190--2398Chr12:25656756..25656780 (25 bp)
AAACAGTTTGTTCCATGATTTTAAT
NONE
Os.54085.1.S1_at--429--8559Chr12:25656781..25656805 (25 bp)
TGGAGTCTTGCAATCATTTTTAAAA
NONE
Os.54085.1.S1_at--369--8255Chr12:25656855..25656879 (25 bp)
GGCAGTTGTCCTATATAGTTAGTCT
NONE
Os.54085.1.S1_at--702--10052Chr11:6704276..6704300 (25 bp)
TAGTTAGTCTCATCCGCAACTAATG
LOC_Os11g12050
Target Sequence 
AAAGAAGCTCTGTTTGATGGACCTGCACAAAGACTTCAAGACTCAATGGAATGGTGACGTGATGCACCAGAAGATGCTGC
ATATTGCAGAGATCCATGTAGGGTGGTGAAGCCAGGATTTAGAGACGGGGGGTGCCATCTACGAGACGTGGTAACTCACT
TAAGGTTCGGTGAACAGTGACATTGTAGCGTTGATGTATGATTGCTAACTCGACATCATACATGTTATAGCGATTAGCTA
GAAGAGAGAATGAGAACCTATAGATCATAATTTGCCAATTTAAACAGTTTGTTCCATGATTTTAATTGGAGTCTTGCAAT
CATTTTTAAAATGATAAATCAGTTAACTAAGTCATTTCATAAGTCCTATATATATAGCTAGGCAGTTGTCCTATATAGTT
AGTCTCATCCGCAACTAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54085.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis