Browse Element(s) Details


Os.54673.1.S1_at

Description gb:AK106441.1
DB_XREF= gi:32991650
TID=Os.54673.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54673 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-D10, full insert sequence.
FL= gb:AK106441.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0799410/11Autophagy protein Apg9 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07974NANA10+4025454..4026478hypothetical protein
LOC_Os10g07978Os.15498.1.S1_at11/1110+4028589..4032507NB-ARC domain containing protein, expressed
LOC_Os10g07982NANA10+4038971..4039291hypothetical protein
LOC_Os10g07986NANA10+4041940..4042533hypothetical protein
LOC_Os10g07990NANA10+4045033..4045634hypothetical protein
LOC_Os10g07994Os.54673.1.S1_at10/1110+4047105..4052635Autophagy protein Apg9 containing protein, expressed
LOC_Os10g07998Os.55015.1.S1_at11/1110+4056846..4060979Integral membrane protein DUF6 containing protein, expressed
LOC_Os10g08002Os.47463.1.S1_x_at5/1110+4066549..4071343transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08002Os.14491.2.S1_x_at5/1110+4066549..4071343transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08006Os.27037.1.A1_at1/1110+4072903..4080287transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006914biological_processautophagy
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54673.1.S1_at--147--931Chr10:4047642..4047666 (25 bp)
AGGCAGCAGGCTGATCCACGAAACA
LOC_Os10g07994
Os.54673.1.S1_at--338--5531NONE
GAAACAGTTTTCAAAGGCCTCCTCA
NONE
Os.54673.1.S1_at--1050--2731Chr10:4047599..4047623 (25 bp)
AAGACAGTTTTCTTGAGCCTCCGGA
LOC_Os10g07994
Os.54673.1.S1_at--841--1091Chr10:4047531..4047555 (25 bp)
AGTGATTGTAGGCTGACCTCCAGAA
LOC_Os10g07994
Os.54673.1.S1_at--885--6651Chr10:4047480..4047504 (25 bp)
GTTGAGCCTCCTGATTTTGGTGATT
LOC_Os10g07994
Os.54673.1.S1_at--771--10451Chr10:4047457..4047481 (25 bp)
TTACATGTCCTGTCATAGCTCTAGC
LOC_Os10g07994
Os.54673.1.S1_at--408--10011Chr10:4047442..4047466 (25 bp)
TAGCTCTAGCTATCATGGCGATGAA
LOC_Os10g07994
Os.54673.1.S1_at--713--891Chr10:4047310..4047334 (25 bp)
AGGCCCGAGTTTCCATTTTACTGAT
LOC_Os10g07994
Os.54673.1.S1_at--900--1691Chr10:4047217..4047241 (25 bp)
AGCCAGCCTTCCTGTACGGATAATA
LOC_Os10g07994
Os.54673.1.S1_at--134--5511Chr10:4047138..4047162 (25 bp)
GAACACTTGTGAACGCGCATTTTCC
LOC_Os10g07994
Os.54673.1.S1_at--6--4591Chr10:4047124..4047148 (25 bp)
GCGCATTTTCCGTGTTCTGATAGAT
LOC_Os10g07994
Target Sequence 
AGGCAGCAGGCTGATCCACGAAACAGTTTTCAAAGGCCTCCTCAAGACAGTTTTCTTGAGCCTCCGGACTTCCGAAATCA
TTTGGAAGCTAGCCATGATTCCGGCCATCAAAGTGATTGTAGGCTGACCTCCAGAAGGTCAACTGATCCACAAGACAGCT
TCGTTGAGCCTCCTGATTTTGGTGATTACATGTCCTGTCATAGCTCTAGCTATCATGGCGATGAAACGTCGGATGGAAAC
TCAGAACTAGATCAAAGCAACAATAGTTGGCGAAGCCCCCATGCCCTGTCAAAGACAAGGTACATGGGTGATGATGATCT
TGACCTAGAACAAGGCCCGAGTTTCCATTTTACTGATGCCCCTCAGAAGGACAGTGGAAGTGAAGGAGATGGACATGGTG
TAGCCAATATTTACAGCTCCACGCCAGCCAGCCTTCCTGTACGGATAATACCTAGAAGCAGTGACCCAGTTTAGGTTGGT
AGACACACGAAAAAGTACTAGTTGGAACACTTGTGAACGCGCATTTTCCGTGTTCTGATAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54673.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis