Browse Element(s) Details


Os.54991.1.S1_at

Description gb:AK107261.1
DB_XREF= gi:32992470
TID=Os.54991.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54991 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-H01, full insert sequence.
FL= gb:AK107261.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3207011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32050Os.15041.1.S1_a_at11/114+19033410..19037973transposon protein, putative, unclassified, expressed
LOC_Os04g32060Os.55758.1.S1_at10/114+19040724..19044486transposon protein, putative, unclassified, expressed
LOC_Os04g32070Os.54991.1.S1_at11/114+19045745..19047749oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g32080Os.20001.1.S1_at6/114+19049260..19051632steroleosin, putative, expressed
LOC_Os04g32090OsAffx.14080.1.S1_at11/114+19053045..19058577expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54991.1.S1_at--220--8691Chr04:19046935..19046959 (25 bp)
TGTGCTCGCCATGCCAAGGATGAGT
LOC_Os04g32070
Os.54991.1.S1_at--424--7991Chr04:19046952..19047089 (25 bp)
GGATGAGTTTCTACAATGCTAGCAA
LOC_Os04g32070
Os.54991.1.S1_at--849--2211Chr04:19047082..19047101 (20 bp)
ACAATGCTAGCAAGGCCGCGGTGCA
LOC_Os04g32070
Os.54991.1.S1_at--150--4531Chr04:19047091..19047115 (25 bp)
GCCGCGGTGCACAACTTCGCCGAGA
LOC_Os04g32070
Os.54991.1.S1_at--783--4351Chr04:19047206..19047230 (25 bp)
CCAGCCATGGCGCAATGGAAGTCGA
LOC_Os04g32070
Os.54991.1.S1_at--1009--8191Chr04:19047222..19047246 (25 bp)
GGAAGTCGACCAGGACACCAGGGAT
LOC_Os04g32070
Os.54991.1.S1_at--290--1731Chr04:19047230..19047356 (25 bp)
ACCAGGACACCAGGGATGCTCAGGT
LOC_Os04g32070
Os.54991.1.S1_at--1159--8091Chr04:19047495..19047519 (25 bp)
GGACGCGTGCCAGCGCGTGTTCTAC
LOC_Os04g32070
Os.54991.1.S1_at--1038--1651Chr04:19047506..19047530 (25 bp)
AGCGCGTGTTCTACCACCGGCGGAG
LOC_Os04g32070
Os.54991.1.S1_at--53--11Chr04:19047714..19047738 (25 bp)
AGTTTGGGAAAATGTACGTGCTTGT
LOC_Os04g32070
Os.54991.1.S1_at--715--751Chr04:19047725..19047749 (25 bp)
ATGTACGTGCTTGTGGTGATCGATC
LOC_Os04g32070
Target Sequence 
TGTGCTCGCCATGCCAAGGATGAGTTTCTACAATGCTAGCAAGGCCGCGGTGCACAACTTCGCCGAGACGCTGCGGATGG
AGCTCCACGGCGAGGTCGGCGTGACGGTGGCGACGCCGGGGTGGGTGGACTCGGAGATGACCAAGGGGAAGCACCTGTCC
AGCCATGGCGCAATGGAAGTCGACCAGGACACCAGGGATGCTCAGGTGGGGGTGTTCCCGGTGGAGCGCGGCGAGCGGTG
CGCGGAGGCGATCGTGGACGCGGTGGCGCGCGGGCGGCGGCGGGTCACCTCGCCGGCGTGGTACGGGGCGCTGTTCCTGT
GGCGGACGATGGCGCCCGAGGTGGCGGACGCGTGCCAGCGCGTGTTCTACCACCGGCGGAGCTCCGCCGCCGGCGGCGGA
GGGAGGGCGAGGGCGGCGCTGGAGGCCACCGGCGCCAAGGCCGTGCTGCAGCCGCCGTCGCTGCGCAGCTCGGAGATCAA
AGTGGAGTAGATGACGATGTGAAGGCGCGCGGCTTCTTTTGCTGTTGCAAGCTTTGTGTTGAGAAAGAAAAAATGGGGAA
TAAAAGTTTGGGAAAATGTACGTGCTTGTGGTGATCGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis