Browse Element(s) Details


Os.55563.1.S1_at

Description gb:AK108322.1
DB_XREF= gi:32993531
TID=Os.55563.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-H03, full insert sequence.
FL= gb:AK108322.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0317011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03140NANA6+1165756..1166751transposon protein, putative, unclassified
LOC_Os06g03150Os.56262.1.S1_at11/116+1171582..1174251expressed protein
LOC_Os06g03150OsAffx.7756.1.S1_at1/116+1171582..1174251expressed protein
LOC_Os06g03150OsAffx.8916.1.S1_x_at1/116+1171582..1174251expressed protein
LOC_Os06g03160NANA6+1179022..1181416hypothetical protein
LOC_Os06g03170Os.55563.1.S1_at11/116+1190562..1191470expressed protein
LOC_Os06g03180Os.45831.2.S1_at11/116+1193479..1198549hypothetical protein
LOC_Os06g03180Os.45831.1.S1_x_at9/116+1193479..1198549hypothetical protein
LOC_Os06g03180Os.45831.2.S1_x_at9/116+1193479..1198549hypothetical protein
LOC_Os06g03190NANA6+1201923..1203812retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03200OsAffx.4700.1.S1_at11/116+1205454..1207952hypothetical protein
LOC_Os06g03210OsAffx.15243.1.S1_at11/116+1208962..1209452hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55563.1.S1_at--724--9931Chr06:1191036..1191060 (25 bp)
TACGGTGCCACAAGCATCCATTGGA
LOC_Os06g03170
Os.55563.1.S1_at--735--2951Chr06:1190977..1191001 (25 bp)
AAGGCCGGACTATTCGTATCGTGGA
LOC_Os06g03170
Os.55563.1.S1_at--534--2731Chr06:1190953..1190977 (25 bp)
AAGACAATGTACTGCCTTTGACCCT
LOC_Os06g03170
Os.55563.1.S1_at--891--7091Chr06:1190927..1190951 (25 bp)
GTCACATCACAATTGTTCCTGGCTG
LOC_Os06g03170
Os.55563.1.S1_at--613--3171Chr06:1190917..1190941 (25 bp)
AATTGTTCCTGGCTGCTAATGCACC
LOC_Os06g03170
Os.55563.1.S1_at--229--9771Chr06:1190901..1190925 (25 bp)
TAATGCACCCACCAATCCTGTATAC
LOC_Os06g03170
Os.55563.1.S1_at--712--511Chr06:1190887..1190911 (25 bp)
ATCCTGTATACATGGCGACTCGGCG
LOC_Os06g03170
Os.55563.1.S1_at--803--8351Chr06:1190851..1190875 (25 bp)
GGCGGGCTCGCAAAACCAGATTGTA
LOC_Os06g03170
Os.55563.1.S1_at--985--6591Chr06:1190833..1190857 (25 bp)
GATTGTACTCTGAGTGCCAGACCAA
LOC_Os06g03170
Os.55563.1.S1_at--944--4491Chr06:1190727..1190751 (25 bp)
GCCGTTATACCTTGCAACAGCTGCT
LOC_Os06g03170
Os.55563.1.S1_at--795--9671Chr06:1190658..1190682 (25 bp)
TCACCGTGTGCCAGTTTGTTGTAGT
LOC_Os06g03170
Target Sequence 
TACGGTGCCACAAGCATCCATTGGACCACGAAAACGAAGTGGAGTGCAAATGCAAAACGAAGGCCGGACTATTCGTATCG
TGGAAGACAATGTACTGCCTTTGACCCTAGTCACATCACAATTGTTCCTGGCTGCTAATGCACCCACCAATCCTGTATAC
ATGGCGACTCGGCGGCAACCGGAGAGGCGGGCTCGCAAAACCAGATTGTACTCTGAGTGCCAGACCAAGAAACGCAAGGT
TTTTTCTCCCTCTCCCTCACTCTGCTTTTGTGGCTGGAGGCGACGGCGAGCAAGGGCCGCCGGTGCCCCGCCGTTATACC
TTGCAACAGCTGCTCCCGTCGGTGCAGTCGCCTCCGCCGCCGCATCTCGCTGCAGTACTCACCGTGTGCCAGTTTGTTGT
AGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis