Browse Element(s) Details


Os.55631.1.S1_at

Description gb:AK108447.1
DB_XREF= gi:32993656
TID=Os.55631.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55631 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-C05, full insert sequence.
FL= gb:AK108447.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0759011/11Protein-tyrosine phosphatase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07560NANA12+3776544..3777080hypothetical protein
LOC_Os12g07570OsAffx.19534.1.S1_at11/1112+3780628..3780907hypothetical protein
LOC_Os12g07580OsAffx.7517.1.S1_x_at11/1112+3788885..3789726Dirigent-like protein, expressed
LOC_Os12g07590Os.22971.1.S1_at11/1112+3791160..3796467Protein-tyrosine phosphatase containing protein, expressed
LOC_Os12g07590Os.55631.1.S1_at11/1112+3791160..3796467Protein-tyrosine phosphatase containing protein, expressed
LOC_Os12g07590Os.22971.2.S1_x_at11/1112+3791160..3796467Protein-tyrosine phosphatase containing protein, expressed
LOC_Os12g07600NANA12+3797756..3798058hypothetical protein
LOC_Os12g07610OsAffx.19535.1.S1_at11/1112+3799030..3800862myb family transcription factor, putative

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Gene Ontology Classification
GO idTypeName
GO:0007243biological_processprotein kinase cascade
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004725molecular_functionprotein tyrosine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55631.1.S1_at--539--731Chr12:3796101..3796125 (25 bp)
ATGTATGTACTGTGTTCGTCCGATT
LOC_Os12g07590
Os.55631.1.S1_at--433--3792Chr12:3796074..3796098 (25 bp)
CTCGTCGTCGTGATGTGAATGTTTG
LOC_Os12g07590
Os.55631.1.S1_at--444--8772Chr12:3796033..3796057 (25 bp)
TGTTTCCTCCCTAGTTTGGCTAACT
LOC_Os12g07590
Os.55631.1.S1_at--842--8311Chr12:3796016..3796040 (25 bp)
GGCTAACTACTAGATTGTTCAGGCT
LOC_Os12g07590
Os.55631.1.S1_at--366--9011Chr12:3795980..3796004 (25 bp)
TGAATACCTGTTTTAGCGATCCTAT
LOC_Os12g07590
Os.55631.1.S1_at--626--4631Chr12:3795965..3795989 (25 bp)
GCGATCCTATATTTTCTGTTTGCAT
LOC_Os12g07590
Os.55631.1.S1_at--794--10851Chr12:3795927..3795951 (25 bp)
TTGGTCTGCTTGTTCATAGGTTCTG
LOC_Os12g07590
Os.55631.1.S1_at--391--131Chr12:3795912..3795936 (25 bp)
ATAGGTTCTGTATCCCCTTTTGTGT
LOC_Os12g07590
Os.55631.1.S1_at--807--151Chr12:3795835..3795859 (25 bp)
ATTATTACTGACACACACAGGCTGT
LOC_Os12g07590
Os.55631.1.S1_at--460--10851Chr12:3795731..3795755 (25 bp)
TTGGGTTATGCCCTATCTTCACATA
LOC_Os12g07590
Os.55631.1.S1_at--204--3331Chr12:3795661..3795685 (25 bp)
CACTTTGATTGGGTTGCTTTCAACT
LOC_Os12g07590
Target Sequence 
ATGTATGTACTGTGTTCGTCCGATTTCCTCGTCGTCGTGATGTGAATGTTTGATTGATAATGTGTTGCTGTTTCCTCCCT
AGTTTGGCTAACTACTAGATTGTTCAGGCTAATTCCGTAATTGAATACCTGTTTTAGCGATCCTATATTTTCTGTTTGCA
TCTTACAATGCAATTTGGTCTGCTTGTTCATAGGTTCTGTATCCCCTTTTGTGTTATGTATGTTAAGTGAGTATAATTTT
GCATGTAGGTTTGAAAATTACTGATCATTATTACTGACACACACAGGCTGTGACAGACTAGCATTAAGTGGCTTTTCTGA
GTGAAATGAAGAATTGTAATCAAAGTGACAGATGTGCAGTCCAAATTACTTTGGGTTATGCCCTATCTTCACATAATTTA
TTTGTTGGTGTATTTAGTTATGCTTTGCTTTGAAGTGAAGCACTTTGATTGGGTTGCTTTCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55631.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis