Browse Element(s) Details


Os.56262.1.S1_at

Description gb:AK109712.1
DB_XREF= gi:32994921
TID=Os.56262.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56262 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-H03, full insert sequence.
FL= gb:AK109712.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0315011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03120Os.50769.1.A1_at5/116+1152607..1154129Aspartic proteinase nepenthesin-2 precursor, putative, expressed
LOC_Os06g03130NANA6+1162379..1162878retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g03140NANA6+1165756..1166751transposon protein, putative, unclassified
LOC_Os06g03150Os.56262.1.S1_at11/116+1171582..1174251expressed protein
LOC_Os06g03150OsAffx.7756.1.S1_at1/116+1171582..1174251expressed protein
LOC_Os06g03150OsAffx.8916.1.S1_x_at1/116+1171582..1174251expressed protein
LOC_Os06g03160NANA6+1179022..1181416hypothetical protein
LOC_Os06g03170Os.55563.1.S1_at11/116+1190562..1191470expressed protein
LOC_Os06g03180Os.45831.2.S1_at11/116+1193479..1198549hypothetical protein
LOC_Os06g03180Os.45831.1.S1_x_at9/116+1193479..1198549hypothetical protein
LOC_Os06g03180Os.45831.2.S1_x_at9/116+1193479..1198549hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56262.1.S1_at--536--3251Chr06:1173663..1173687 (25 bp)
CAACCAGGACAGCACGGAGCTCGTG
LOC_Os06g03150
Os.56262.1.S1_at--503--5891Chr06:1173679..1173703 (25 bp)
GAGCTCGTGTTCCAGGCCATGAACG
LOC_Os06g03150
Os.56262.1.S1_at--986--1751Chr06:1173740..1173764 (25 bp)
ACCTCCGGCCATTGCTAATGCTAAT
LOC_Os06g03150
Os.56262.1.S1_at--386--9771Chr06:1173755..1173779 (25 bp)
TAATGCTAATGCTGCGGCGCACCAG
LOC_Os06g03150
Os.56262.1.S1_at--277--7891Chr06:1173782..1173806 (25 bp)
GGTTCGAGTGCGACATGGTCGTCAT
LOC_Os06g03150
Os.56262.1.S1_at--317--3411Chr06:1173847..1173871 (25 bp)
CAGCAGGAAATGACGGTGTTGCAGA
LOC_Os06g03150
Os.56262.1.S1_at--829--9671Chr06:1174109..1174133 (25 bp)
TCACGCCGCCGGACACGATGGATCG
LOC_Os06g03150
Os.56262.1.S1_at--135--7931Chr06:1174128..1174152 (25 bp)
GGATCGTGTTTGAGTACCCATTCTA
LOC_Os06g03150
Os.56262.1.S1_at--562--10231Chr06:1174136..1174160 (25 bp)
TTTGAGTACCCATTCTAAACATTAG
LOC_Os06g03150
Os.56262.1.S1_at--682--3551Chr06:1174167..1174191 (25 bp)
CATCTCGAGAGAATTCGTTCTGAGC
LOC_Os06g03150
Os.56262.1.S1_at--656--5211Chr06:1174177..1174201 (25 bp)
GAATTCGTTCTGAGCATGTTATCTA
LOC_Os06g03150
Target Sequence 
CAACCAGGACAGCACGGAGCTCGTGTTCCAGGCCATGAACGACGAGCTGAAGCAGGTGCTCGGCTTCTGGGGCTACCACC
TCCGGCCATTGCTAATGCTAATGCTGCGGCGCACCAGGAGGTTCGAGTGCGACATGGTCGTCATGGCCGGAGTCGCCGAG
CGGCGGCCGGCGAGCAAGCAGCAGCAGCAGGAAATGACGGTGTTGCAGAAGGGCGCGGCGCTGGGGCGCGCGCTGGTGGA
GAAAGCGGGGAGGGATGGTGCCGGCGGCGGGGTGTGGAAGGTGGTGGGCGATGTGTGGGTAGAGCTCGCCGTGGAGGTGG
CGCCGGCGAGCGACGAGGAGCGCGTGATGGGGCACAGGAAGGTGTTGCCGGAGGGCGGCGAGTTCGTGACCGTGCTCTGG
GCGCTCGCCGTGCACACCGGCATAAGCCGCCGCCTGGCTGTCACGCTCACGCCGCCGGACACGATGGATCGTGTTTGAGT
ACCCATTCTAAACATTAGAGGGGACATCTCGAGAGAATTCGTTCTGAGCATGTTATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56262.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis