Browse Element(s) Details


Os.5661.1.S1_s_at

Description gb:AK099637.1
DB_XREF= gi:32984846
TID=Os.5661.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5661 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059L23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059L23, full insert sequence.
FL= gb:AK067905.1 gb:AK099637.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3969411/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39640NANA8+24969322..24972773Cytochrome P450 family protein
LOC_Os08g39650NANA8+24974284..24976560retrotransposon protein, putative, unclassified
LOC_Os08g39660Os.15537.1.S1_at11/118+24976813..24978479Cytochrome P450 family protein, expressed
LOC_Os08g39670NANA8+24979909..24981853retrotransposon protein, putative, LINE subclass
LOC_Os08g39680OsAffx.17424.1.S1_at8/118+24983300..24988153expressed protein
LOC_Os08g39680OsAffx.23176.3.S1_x_at1/118+24983300..24988153expressed protein
LOC_Os08g39694Os.5661.1.S1_s_at11/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.51910.1.S1_at10/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.51910.1.S1_x_at10/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.54695.1.S1_at1/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.52051.1.S1_x_at1/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.38269.1.S1_x_at1/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694OsAffx.855.1.S1_x_at1/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39710OsAffx.8275.1.S1_at7/118+25006012..25009317retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g39720NANA8+25013298..25014131retrotransposon protein, putative, unclassified
LOC_Os08g39730Os.14951.1.S1_at10/118+25022315..25024025Cytochrome P450 family protein, expressed
LOC_Os08g39740OsAffx.6086.1.S1_at11/118+25024084..25026892expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0005792cellular_componentmicrosome
GO:0004497molecular_functionmonooxygenase activity
GO:0019825molecular_functionoxygen binding
GO:0046409molecular_functionp-coumarate 3-hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5661.1.S1_s_at--629--2051Chr08:25001224..25001248 (25 bp)
ACTTAATTTGAAGGCAGCGCTAGCT
LOC_Os08g39694
Os.5661.1.S1_s_at--411--1651Chr08:25001239..25001263 (25 bp)
AGCGCTAGCTATGCATATTGGTGTT
LOC_Os08g39694
Os.5661.1.S1_s_at--68--10851Chr08:25001276..25001300 (25 bp)
TTGGGATATCACCATGTACATACAC
LOC_Os08g39694
Os.5661.1.S1_s_at--297--9872Chr08:25001292..25001316 (25 bp)
TACATACACATACACCGGCGAGAAT
LOC_Os08g39694
Os.5661.1.S1_s_at--897--5952Chr08:25001311..25001335 (25 bp)
GAGAATACCGCATATCAGTTCTTGT
LOC_Os08g39694
Os.5661.1.S1_s_at--560--9691Chr08:25001380..25001404 (25 bp)
TAAGGGAGTTACCTATTCAAGGCGG
LOC_Os08g39694
Os.5661.1.S1_s_at--985--10451Chr08:25001395..25001419 (25 bp)
TTCAAGGCGGTATCCATAATGGTTC
LOC_Os08g39694
Os.5661.1.S1_s_at--939--331Chr08:25001410..25001434 (25 bp)
ATAATGGTTCCTGTATTCTTGTTGG
LOC_Os08g39694
Os.5661.1.S1_s_at--805--111Chr08:25001424..25001448 (25 bp)
ATTCTTGTTGGATTTGAGGGCATCG
LOC_Os08g39694
Os.5661.1.S1_s_at--927--10731Chr08:25001437..25001461 (25 bp)
TTGAGGGCATCGATTGTTTAATAAT
LOC_Os08g39694
Os.5661.1.S1_s_at--947--8211Chr08:25001468..25001492 (25 bp)
GGAATTTCATATGCACAAATCTTCT
LOC_Os08g39694
Target Sequence 
ACTTAATTTGAAGGCAGCGCTAGCTATGCATATTGGTGTTAATATGTTAAATTTGGGATATCACCATGTACATACACATA
CACCGGCGAGAATACCGCATATCAGTTCTTGTATTATGGAGATAAATTCTCAAATAGGGATAAGGTCTTGAGCAGATAAG
GGAGTTACCTATTCAAGGCGGTATCCATAATGGTTCCTGTATTCTTGTTGGATTTGAGGGCATCGATTGTTTAATAATTT
GTTTGGAATTTCATATGCACAAATCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5661.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis