Browse Element(s) Details


Os.57462.1.S1_x_at

Description gb:D10410.1
DB_XREF= gi:218138
TID=Os.57462.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57462 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for enolase (AK146 gene), partial sequence
DEF=Rice mRNA for enolase (AK146 gene), partial sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g085504/11Enolase, putative, expressed
LOC_Os03g144501/11Enolase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08510NANA10+4379981..4381020hypothetical protein
LOC_Os10g08520OsAffx.18173.1.S1_at9/1110+4386305..4387552hypothetical protein
LOC_Os10g08530OsAffx.6604.1.S1_at11/1110+4391306..4394368hypothetical protein
LOC_Os10g08540Os.23185.1.S1_at10/1110+4395411..4402922Cytochrome P450 family protein, expressed
LOC_Os10g08550Os.2232.1.S1_a_at11/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08550Os.2232.3.S1_x_at11/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08550Os.57462.1.S1_x_at4/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08560Os.27691.2.S1_x_at11/1110+4419535..4420535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08560Os.27691.2.S1_at11/1110+4419535..4420535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08570OsAffx.18174.1.S1_at10/1110+4421729..4427909RNA recognition motif family protein, expressed
LOC_Os10g08570Os.10084.3.S1_at1/1110+4421729..4427909RNA recognition motif family protein, expressed
LOC_Os10g08580Os.46278.1.S1_a_at11/1110+4429249..4433064Deoxyribodipyrimidine photo-lyase, putative, expressed
LOC_Os10g08590OsAffx.8457.1.S1_at11/1110+4434863..4436227hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009416biological_processresponse to light stimulus
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004634molecular_functionphosphopyruvate hydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57462.1.S1_x_at--1116--4211Chr10:4408203..4408227 (25 bp)
CCGTACCTGCATTCAACGTCATTAA
LOC_Os10g08550
Os.57462.1.S1_x_at--593--9711Chr10:4408191..4408215 (25 bp)
TCAACGTCATTAACGGTGGATCACA
LOC_Os10g08550
Os.57462.1.S1_x_at--327--7732Chr10:4408180..4408201 (22 bp)
GGTGGATCACATGCTGGAAACAGCT
LOC_Os10g08550
Os.57462.1.S1_x_at--715--2471NONE
AACAGCTTGCAATGACAGGAAGTTC
NONE
Os.57462.1.S1_x_at--125--2831NONE
AAGTTCATGATCTTCTACTGGGCCG
NONE
Os.57462.1.S1_x_at--941--711NONE
ATGATCTTCTACTGGGCCGCGTTAT
NONE
Os.57462.1.S1_x_at--1150--3711NONE
CTACTGGGCCGCGTTATTCAAGGAG
NONE
Os.57462.1.S1_x_at--984--4211NONE
CCGCGTTATTCAAGGAGGCCAATGA
NONE
Os.57462.1.S1_x_at--309--6651NONE
GTTGAAGGTGTACCAACAACCTGAA
NONE
Os.57462.1.S1_x_at--1088--2171Chr10:4407920..4408019 (25 bp)
ACAACCTGAAGTCTGTTATCAAGAA
LOC_Os10g08550
Os.57462.1.S1_x_at--632--7831NONE
GGTCAAGGATGCCACCAATGTTGGT
NONE
Target Sequence 
CCGTACCTGCATTCAACGTCATTAACGGTGGATCACATGCTGGAAACAGCTTGCAATGACAGGAAGTTCATGATCTTCTA
CTGGGCCGCGTTATTCAAGGAGGCCAATGAAGATGGGTGTTGAAGGTGTACCAACAACCTGAAGTCTGTTATCAAGAAGA
AGTATGGTCAAGGATGCCACCAATGTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57462.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis