Browse Element(s) Details


Os.8149.1.S1_at

Description gb:AK111726.1
DB_XREF= gi:37988389
TID=Os.8149.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8149 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023036F23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036F23, full insert sequence.
FL= gb:AK111726.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4603011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45980Os.54682.1.S1_at10/112+28008953..28014651Regulator of chromosome condensation family protein, expressed
LOC_Os02g45990NANA2+28017283..28020211hypothetical protein
LOC_Os02g46000OsAffx.20387.1.S1_x_at1/112+28021498..28023975retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46010NANA2+28024633..28027046retrotransposon protein, putative, unclassified
LOC_Os02g46020OsAffx.22896.1.S1_x_at1/112+28029729..28030166transposon protein, putative, unclassified
LOC_Os02g46030Os.8149.1.S1_at11/112+28035248..28038280myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g46040NANA2+28048051..28054207retrotransposon protein, putative, unclassified
LOC_Os02g46050NANA2+28054835..28058125retrotransposon protein, putative, unclassified
LOC_Os02g46060OsAffx.19542.3.S1_x_at3/112+28059010..28063746retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0042752biological_processregulation of circadian rhythm
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8149.1.S1_at--1094--2851Chr02:28035772..28035796 (25 bp)
AAGTGCGAGAGCTCGGCGTCCGTCA
LOC_Os02g46030
Os.8149.1.S1_at--685--7571Chr02:28035734..28035758 (25 bp)
GGGCTTCATGCCGTACAAGAGGTGC
LOC_Os02g46030
Os.8149.1.S1_at--630--8951Chr02:28035618..28035642 (25 bp)
TGACTCGTCGCACGGACACGTCACG
LOC_Os02g46030
Os.8149.1.S1_at--157--4291Chr02:28035521..28035545 (25 bp)
CCTGCTGTTAGGATGTTGCTCGAGA
LOC_Os02g46030
Os.8149.1.S1_at--652--5191Chr02:28035468..28035492 (25 bp)
GCAATTCTGGTTTTTACTCGTCGAT
LOC_Os02g46030
Os.8149.1.S1_at--821--10671Chr02:28035392..28035416 (25 bp)
TTGCCTGTAATTTTATCCCCAACTC
LOC_Os02g46030
Os.8149.1.S1_at--866--9971Chr02:28035379..28035403 (25 bp)
TATCCCCAACTCGAATACGTTCAGA
LOC_Os02g46030
Os.8149.1.S1_at--132--6131Chr02:28035351..28035375 (25 bp)
GAGTGGCTGTCAATGTTGCCTTTTA
LOC_Os02g46030
Os.8149.1.S1_at--663--4451Chr02:28035334..28035358 (25 bp)
GCCTTTTATCAACCTGAATCTCGGA
LOC_Os02g46030
Os.8149.1.S1_at--537--4431Chr02:28035301..28035325 (25 bp)
GCCATAGGCTAACTACATGTAATCT
LOC_Os02g46030
Os.8149.1.S1_at--428--7071Chr02:28035283..28035307 (25 bp)
GTAATCTAGGCTTGTATCTCTCCAC
LOC_Os02g46030
Target Sequence 
AAGTGCGAGAGCTCGGCGTCCGTCACCCTGCTGCAGAGGGGCTTCATGCCGTACAAGAGGTGCGCGGCGGAGAGCGAGCT
GCTGCGATCGGAGGCCGCCGGAGGAGAGGAGGCCNTCGCCGACGGTGANCTGACAAGGCTNTGCTTGTGACAANTGACTC
GTCGCACGGACACGTCACGCCACAGTACTNCTATNCGTAGGTGACNAATAACAAATCTGACATGAGATTAAGGCGGGAAG
AAGAGGCATGTCCTGCTGTTAGGATGTTGCTCGAGACCNCTTTAGTTTTCCAGAAAATGGAAGAGCAATTCTGGTTTTTA
CTCGTCGATNTAGTATTGTATAATCTGTAAGATAACAACTTTTGTACTTTTTTTTTTANTTTGCCTGTAATTTTATCCCC
AACTCGAATACGTTCAGAGTTGAGTGGCTGTCAATGTTGCCTTTTATCAACCTGAATCTCGGACAGGGGTTGCCATAGGC
TAACTACATGTAATCTAGGCTTGTATCTCTCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8149.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis