Browse Element(s) Details


Os.8217.1.S1_at

Description gb:AK121557.1
DB_XREF= gi:37991180
TID=Os.8217.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8217 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative aldehyde oxidase (OSJNAa0087H07.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033J23, full insert sequence.
FL= gb:AK121557.1 gb:AK103597.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0486011/11Aldehyde oxidase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04840OsAffx.30282.1.S1_at11/1110+2323745..2324838hypothetical protein
LOC_Os10g04850OsAffx.20756.1.S1_at11/1110+2334552..2338653F-box domain containing protein
LOC_Os10g04860Os.8217.1.S1_at11/1110+2343001..2352865Aldehyde oxidase 1, putative, expressed
LOC_Os10g04870NANA10+2354227..2354472hypothetical protein
LOC_Os10g04880OsAffx.30284.2.S1_at11/1110+2356330..2357124hypothetical protein
LOC_Os10g04890Os.46727.1.S1_at10/1110+2358807..2362662expressed protein
LOC_Os10g04900Os.46856.1.S1_at11/1110+2370293..2371928F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009688biological_processabscisic acid biosynthesis
GO:0009851biological_processauxin biosynthesis
GO:0004031molecular_functionaldehyde oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8217.1.S1_at--114--9531Chr10:2352288..2352312 (25 bp)
TCTCTTTCTTCCTAGCCAATTTTTG
LOC_Os10g04860
Os.8217.1.S1_at--392--8371Chr10:2352333..2352357 (25 bp)
GGCGAGTTCGTCCAATCGATGGTCA
LOC_Os10g04860
Os.8217.1.S1_at--938--7811Chr10:2352353..2352377 (25 bp)
GGTCACAGACTAGCAACCTTACCAG
LOC_Os10g04860
Os.8217.1.S1_at--229--3231Chr10:2352396..2352420 (25 bp)
CAAGTACTGGGTGCCGAGTTGCCGA
LOC_Os10g04860
Os.8217.1.S1_at--28--6071Chr10:2352411..2352435 (25 bp)
GAGTTGCCGACTAGACATGCTACAT
LOC_Os10g04860
Os.8217.1.S1_at--51--9891Chr10:2352431..2352455 (25 bp)
TACATTGCTGCTCTTGCATCATGTT
LOC_Os10g04860
Os.8217.1.S1_at--465--731Chr10:2352451..2352475 (25 bp)
ATGTTGCATCCCGTGCCGGAGATTG
LOC_Os10g04860
Os.8217.1.S1_at--436--1251Chr10:2352470..2352494 (25 bp)
AGATTGGGCCTCTGGCTGTGCAGAA
LOC_Os10g04860
Os.8217.1.S1_at--848--10291Chr10:2352557..2352581 (25 bp)
TTTCGGCACTTTGGTCTGAGGTAGA
LOC_Os10g04860
Os.8217.1.S1_at--851--5351Chr10:2352580..2352604 (25 bp)
GAAGATGACTGTTCTCTGCTCTAAG
LOC_Os10g04860
Os.8217.1.S1_at--161--6731Chr10:2352590..2352614 (25 bp)
GTTCTCTGCTCTAAGATTCGTGCGA
LOC_Os10g04860
Target Sequence 
TCTCTTTCTTCCTAGCCAATTTTTGGCCGGATGAACAGCAACAGCGGCGAGTTCGTCCAATCGATGGTCACAGACTAGCA
ACCTTACCAGCCTCCCAAGCTAAGAGCACAAGTACTGGGTGCCGAGTTGCCGACTAGACATGCTACATTGCTGCTCTTGC
ATCATGTTGCATCCCGTGCCGGAGATTGGGCCTCTGGCTGTGCAGAAAGGAGCCAGGGGAGGTAGGGACTGGGAAGTGGA
AAGGGAGAGGAGAGAGGGATTGGGGAATTTTTCGGCACTTTGGTCTGAGGTAGAAGATGACTGTTCTCTGCTCTAAGATT
CGTGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8217.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis