Browse Element(s) Details


Os.8263.1.S1_s_at

Description gb:BI796781
DB_XREF= gi:15848505
DB_XREF=H055B09
CLONE=H055B09
TID=Os.8263.1
CNT=18
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.8263 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_568974.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3203011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32004NANA4+18977352..18977636hypothetical protein
LOC_Os04g32010Os.56217.1.S1_at11/114+18981733..18983917Acetolactate synthase III, chloroplast precursor, putative, expressed
LOC_Os04g32020Os.11872.1.S1_at11/114+18988323..189951512-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed
LOC_Os04g32020Os.11872.2.S1_at11/114+18988323..189951512-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed
LOC_Os04g32030Os.8263.1.S1_s_at11/114+19001737..19004943heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0046916biological_processtransition metal ion homeostasis
GO:0005507molecular_functioncopper ion binding
GO:0046872molecular_functionmetal ion binding
GO:0046914molecular_functiontransition metal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8263.1.S1_s_at--1019--4091Chr04:19004387..19004411 (25 bp)
CGAACCTATACCTGCATTATCCAAG
LOC_Os04g32030
Os.8263.1.S1_s_at--693--151Chr04:19004402..19004426 (25 bp)
ATTATCCAAGGTTCGCATTCCCTGC
LOC_Os04g32030
Os.8263.1.S1_s_at--188--3391Chr04:19004545..19004569 (25 bp)
CAGATCTTCAGCGACGAAAACCCGA
LOC_Os04g32030
Os.8263.1.S1_s_at--380--5771Chr04:19004557..19004581 (25 bp)
GACGAAAACCCGAATGCCTGCTCTG
LOC_Os04g32030
Os.8263.1.S1_s_at--963--9171Chr04:19004571..19004595 (25 bp)
TGCCTGCTCTGTCATGTAAAAAGTT
LOC_Os04g32030
Os.8263.1.S1_s_at--751--3111Chr04:19004650..19004674 (25 bp)
AATTTGGAGGGTGTCATTGCAACAA
LOC_Os04g32030
Os.8263.1.S1_s_at--236--71Chr04:19004665..19004689 (25 bp)
ATTGCAACAATTGCCCTTTGAGCAA
LOC_Os04g32030
Os.8263.1.S1_s_at--465--5051Chr04:19004705..19004729 (25 bp)
GCAGCTTGAAGAAAGTACCAGGCTT
LOC_Os04g32030
Os.8263.1.S1_s_at--630--2831Chr04:19004807..19004831 (25 bp)
AAGTCTGGACTTCCTTGTCAGTTTA
LOC_Os04g32030
Os.8263.1.S1_s_at--1159--4311Chr04:19004819..19004843 (25 bp)
CCTTGTCAGTTTATGGATGCTATCT
LOC_Os04g32030
Os.8263.1.S1_s_at--933--4811Chr04:19004857..19004881 (25 bp)
GCTCTCTGTACTGTTTCACCTTCAA
LOC_Os04g32030
Target Sequence 
CGAACCTATACCTGCATTATCCAAGGTTCGCATTCCCTGCCGGATACTACCCGCCCGGGCCGGGTTATGCCTACCCACCG
CCCTACCCTCCATCCTACCCGCCACCATACCAGCCATCCTACCCGCCATACCCGTCGCACCCTTCGCACCACCCGTCGCA
GATCTTCAGCGACGAAAACCCGAATGCCTGCTCTGTCATGTAAAAAGTTTTAGAACCTGGGGGATCTAGAGTGAAAAAGA
ATAAGAAGAGCACAGGACTGCATAATTTGGAGGGTGTCATTGCAACAATTGCCCTTTGAGCAAAGCAAAGCTAAAATGGC
AGCTTGAAGAAAGTACCAGGCTTTTTTGGGGGTTAGGTTTCTTTTTAACTTTCTTTTGTAATTTTAACCCTTTTCTTTCA
TCTGGTATAAACTACAAAGCAAGTCTGGACTTCCTTGTCAGTTTATGGATGCTATCTTATGTAGAATTTTGCTCTCTGTA
CTGTTTCACCTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8263.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis