Browse Element(s) Details


Os.9416.1.S1_at

Description gb:AB073749.1
DB_XREF= gi:20196209
GEN=OsCIN1
TID=Os.9416.1
CNT=27
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.9416 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsCIN1 mRNA for cell wall invertase, complete cds.
PROD=cell wall invertase
FL= gb:AB073749.1 gb:AY342319.1 gb:AK121403.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3311010/11Beta-fructofuranosidase, insoluble isoenzyme 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33100OsAffx.12327.1.S1_at11/112+19654414..19654755hypothetical protein
LOC_Os02g33100OsAffx.12327.1.S1_x_at11/112+19654414..19654755hypothetical protein
LOC_Os02g33110Os.9416.1.S1_at10/112+19676675..19681381Beta-fructofuranosidase, insoluble isoenzyme 1 precursor, putative, expressed
LOC_Os02g33120OsAffx.24551.1.S1_at11/112+19697600..19698067protein phosphatase 2C, putative
LOC_Os02g33130OsAffx.24552.1.S1_at11/112+19702791..19703462pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g33140Os.9197.1.S1_at11/112+19704439..1970760040S ribosomal protein S14, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9416.1.S1_at--454--5971Chr02:19680656..19680818 (25 bp)
GAGAAGCTTGATTGACCGTTCGGTG
LOC_Os02g33110
Os.9416.1.S1_at--537--2771Chr02:19680843..19680867 (25 bp)
AAGACCTGCATCCTGTCGAGAGTTT
LOC_Os02g33110
Os.9416.1.S1_at--71--5991Chr02:19680860..19680884 (25 bp)
GAGAGTTTACCCGTCGATGGCGATA
LOC_Os02g33110
Os.9416.1.S1_at--802--6491Chr02:19680881..19680905 (25 bp)
GATAGGTGACAAGGCCCATCTTTAC
LOC_Os02g33110
Os.9416.1.S1_at--599--1671Chr02:19680967..19680991 (25 bp)
AGCCGCTTATGAATGGCGCCTAATT
LOC_Os02g33110
Os.9416.1.S1_at--1029--8391NONE
GGCGCCTAATTTAATTTGCCGCGGA
NONE
Os.9416.1.S1_at--513--10211Chr02:19681037..19681061 (25 bp)
TATTAAATCATCACTCGCCATCTGC
LOC_Os02g33110
Os.9416.1.S1_at--870--8791Chr02:19681098..19681122 (25 bp)
TGTTCTTGGCCGATGTTGCACGCTG
LOC_Os02g33110
Os.9416.1.S1_at--503--6671Chr02:19681112..19681136 (25 bp)
GTTGCACGCTGCACGATATTTGATT
LOC_Os02g33110
Os.9416.1.S1_at--909--6851Chr02:19681160..19681184 (25 bp)
GTTTGTATTCGTGTCTCCAGATATC
LOC_Os02g33110
Os.9416.1.S1_at--142--2091Chr02:19681281..19681305 (25 bp)
ACATTTGTTTGTACCACGATCGAGT
LOC_Os02g33110
Target Sequence 
GAGAAGCTTGATTGACCGTTCGGTGGTTGAGAGCTTCGGCGCCGGGGGCAAGACCTGCATCCTGTCGAGAGTTTACCCGT
CGATGGCGATAGGTGACAAGGCCCATCTTTACGTCTTCAACAATGGGGAGGCGGATATTAAGATTTCACATCTGAAAGCG
TGGGAAATGAAGAAGCCGCTTATGAATGGCGCCTAATTTAATTTGCCGCGGATATATATGATGGCGACTTTAATTAATTG
CTATTATTAAATCATCACTCGCCATCTGCGATATACCGGCCAGATCGTCCCTGACATCGATCTCCTGTTCTTGGCCGATG
TTGCACGCTGCACGATATTTGATTGCTTGTTGCTGAGGATGATTGGAGTTTGTATTCGTGTCTCCAGATATCGAAAGACC
AGGGTAATTTTACACTCTTCTTGTACAATTAATTGATTGTATCACGAGTTGTTTGTAAACAATTGTTTGTATCACGAGTT
GTTTGCAAACATTTGTTTGTACCACGATCGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis