Browse Element(s) Details


Os.9648.1.A1_at

Description gb:CB629224
DB_XREF= gi:29624213
DB_XREF=OSIIEb05E20.r
CLONE=OSIIEb05E20
TID=Os.9648.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.9648 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_187189.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4380011/11DIRP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43779NANA3+24456109..24456462hypothetical protein
LOC_Os03g43790NANA3+24468752..24469390hypothetical protein
LOC_Os03g43800OsAffx.13332.1.S1_x_at11/113+24471620..24488796DIRP family protein, expressed
LOC_Os03g43800OsAffx.13332.1.S1_at11/113+24471620..24488796DIRP family protein, expressed
LOC_Os03g43800Os.9648.1.A1_at11/113+24471620..24488796DIRP family protein, expressed
LOC_Os03g43800OsAffx.26050.13.S1_x_at2/113+24471620..24488796DIRP family protein, expressed
LOC_Os03g43810Os.19229.1.S1_a_at10/113+24498759..24503742Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g43814Os.54774.1.S1_x_at1/113+24511161..24511790retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9648.1.A1_at--905--2871Chr03:24488304..24488328 (25 bp)
AAGTGGCTAGCTCCTTGGCCTGCAC
LOC_Os03g43800
Os.9648.1.A1_at--872--9231Chr03:24488315..24488339 (25 bp)
TCCTTGGCCTGCACATCATATGTAT
LOC_Os03g43800
Os.9648.1.A1_at--126--8771Chr03:24488339..24488363 (25 bp)
TGTATGTCGCGTGCAACTTTTTTAA
LOC_Os03g43800
Os.9648.1.A1_at--724--2411Chr03:24488458..24488482 (25 bp)
AAAAATATTCATGCTGTCTATCTCT
LOC_Os03g43800
Os.9648.1.A1_at--1112--4171Chr03:24488596..24488620 (25 bp)
CCCAGTGTAGTTTTAGGCTTTGTAT
LOC_Os03g43800
Os.9648.1.A1_at--1120--9811Chr03:24488627..24488651 (25 bp)
TAAAGATCCTGTCCCGATTTCTATG
LOC_Os03g43800
Os.9648.1.A1_at--917--4171Chr03:24488638..24488662 (25 bp)
TCCCGATTTCTATGGGTAGGCTAGA
LOC_Os03g43800
Os.9648.1.A1_at--989--5451Chr03:24488668..24488692 (25 bp)
GAACTAAATCCTAGCCTTTTCACAT
LOC_Os03g43800
Os.9648.1.A1_at--931--3651Chr03:24488683..24488707 (25 bp)
CTTTTCACATGGACGGGCTAGGATC
LOC_Os03g43800
Os.9648.1.A1_at--970--6391Chr03:24488704..24488728 (25 bp)
GATCGTGGCCCATCTGAACAAGGTC
LOC_Os03g43800
Os.9648.1.A1_at--467--1031Chr03:24488724..24488748 (25 bp)
AGGTCTAGGAGTTCACAAGGTGCTT
LOC_Os03g43800
Target Sequence 
AAGTGGCTAGCTCCTTGGCCTGCACATCATATGTATGTATGTCGCGTGCAACTTTTTTAATTCTAATTTTAATTTTGCAG
TCTATACAAGATGTAACTTATTAGTCGTTATTTTTATATTGTTGTATCCTAGTTAGNCCATATTAGTGAACTGTAAAAAA
TATTCATGCTGTCTATCTCTGGCTCGCTCTCTATTGCATCTTTTGCCAACTCCAAGCGGGAGCTTAGGCTTAAACGGTGG
TTGTTAGGCAAACTGAAGATCNTCATGGTAAGAGATGGTTGCATGNNNGTGTTNCCCAGTGTAGTTTTAGGCTTTGTATG
GCAGCTAAAGATCCTGTCCCGATTTCTATGGGTAGGCTAGAATTTTGAACTAAATCCTAGCCTTTTCACATGGACGGGCT
AGGATCGTGGCCCATCTGAACAAGGTCTAGGAGTTCACAAGGTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9648.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis