Browse Element(s) Details


OsAffx.11383.1.S1_at

Description tigr:9629.m03718
TID=OsAffx.11383.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3909011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39050NANA1+22276787..22283338retrotransposon protein, putative, unclassified
LOC_Os01g39060Os.17577.4.A1_x_at2/111+22286787..22289844expressed protein
LOC_Os01g39070OsAffx.23571.1.S1_at11/111+22292517..22292894LOB domain protein 22, putative
LOC_Os01g39070OsAffx.23571.1.S1_x_at11/111+22292517..22292894LOB domain protein 22, putative
LOC_Os01g39080NANA1+22294831..22295418hypothetical protein
LOC_Os01g39090OsAffx.11383.1.S1_at11/111+22298067..22298312hypothetical protein
LOC_Os01g39100OsAffx.2191.1.S1_at11/111+22300534..22307329Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g39110NANA1+22320771..22323418Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11383.1.S1_at--26--8711Chr01:22298226..22298250 (25 bp)
TGTCGACGATCCGTTGGTTAAAGAG
LOC_Os01g39090
OsAffx.11383.1.S1_at--239--5811Chr01:22298219..22298243 (25 bp)
GATCCGTTGGTTAAAGAGTTCCGTG
LOC_Os01g39090
OsAffx.11383.1.S1_at--674--9811Chr01:22298208..22298232 (25 bp)
TAAAGAGTTCCGTGACAAGTTAGTG
LOC_Os01g39090
OsAffx.11383.1.S1_at--291--2831Chr01:22298192..22298216 (25 bp)
AAGTTAGTGGATGAGGTCCTCACCA
LOC_Os01g39090
OsAffx.11383.1.S1_at--490--8892Chr01:22388528..22388552 (25 bp)
TGAGGTCCTCACCATCGATGCCGGA
NONE
OsAffx.11383.1.S1_at--772--4292Chr01:22388534..22388558 (25 bp)
CCTCACCATCGATGCCGGAGATATG
NONE
OsAffx.11383.1.S1_at--543--6492Chr01:22388553..22388603 (25 bp)
GATATGGAGGCACTATTCGAGGAAC
NONE
OsAffx.11383.1.S1_at--321--932Chr01:22388560..22388610 (25 bp)
AGGCACTATTCGAGGAACACCAGGA
NONE
OsAffx.11383.1.S1_at--466--8151Chr01:22298136..22298160 (25 bp)
GGAACACCAGGAGAATCCGGAGCTG
LOC_Os01g39090
OsAffx.11383.1.S1_at--57--8871Chr01:22298101..22298125 (25 bp)
TGATGCTGATCTCTCAGTCCGACCA
LOC_Os01g39090
OsAffx.11383.1.S1_at--590--9111Chr01:22298098..22298122 (25 bp)
TGCTGATCTCTCAGTCCGACCAAGA
LOC_Os01g39090
Target Sequence 
TGTCGACGATCCGTTGGTTAAAGAGTTCCGTGACAAGTTAGTGGATGAGGTCCTCACCATCGATGCCGGAGATATGGAGG
CACTATTCGAGGAACACCAGGAGAATCCGGAGCTGGAGAGGACGCTGATGCTGATCTCTCAGTCCGACCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11383.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis