Browse Element(s) Details


OsAffx.12011.1.S1_at

Description tigr:9630.m01167
TID=OsAffx.12011.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Helix-loop-helix DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1282011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12800OsAffx.24215.1.S1_x_at11/112+6716934..6726017Elongation factor 1-gamma, putative, expressed
LOC_Os02g12800Os.4765.1.S1_s_at11/112+6716934..6726017Elongation factor 1-gamma, putative, expressed
LOC_Os02g12800Os.4765.1.S2_at9/112+6716934..6726017Elongation factor 1-gamma, putative, expressed
LOC_Os02g12810NANA2+6726340..6733254MAP3K delta-1 protein kinase, putative, expressed
LOC_Os02g12820OsAffx.12011.1.S1_at11/112+6747298..6749884Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g12830OsAffx.24216.1.S1_at10/112+6751348..6752533hypothetical protein
LOC_Os02g12840OsAffx.24217.1.S1_at11/112+6769015..6778174DEAD/DEAH box helicase family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12011.1.S1_at--261--10771Chr02:6748277..6748301 (25 bp)
TTGAGAGGTTTGCTTCCTCCAGGAT
LOC_Os02g12820
OsAffx.12011.1.S1_at--270--1411Chr02:6747841..6747865 (25 bp)
AGACAAGGCCACAGTTCTTGCCAAG
LOC_Os02g12820
OsAffx.12011.1.S1_at--957--6731Chr02:6747828..6747852 (25 bp)
GTTCTTGCCAAGACACTAGAGTACA
LOC_Os02g12820
OsAffx.12011.1.S1_at--252--7031Chr02:6747808..6747832 (25 bp)
GTACATGAACTTGCTGATAGCTCAA
LOC_Os02g12820
OsAffx.12011.1.S1_at--514--2271Chr02:6747785..6747809 (25 bp)
AAATCTCGGAGCTCGAAGCCAAGAA
LOC_Os02g12820
OsAffx.12011.1.S1_at--1009--2991Chr02:6747700..6747724 (25 bp)
AATGATCCGAACAGTCAACGAGGTT
LOC_Os02g12820
OsAffx.12011.1.S1_at--207--371Chr02:6747665..6747689 (25 bp)
ATAATCACCAATGGCTAGCCGTCGC
LOC_Os02g12820
OsAffx.12011.1.S1_at--1094--7691Chr02:6747470..6747494 (25 bp)
GGGTGCTCGCACTGCTCAAGGCGAT
LOC_Os02g12820
OsAffx.12011.1.S1_at--949--2951Chr02:6747390..6747414 (25 bp)
AATGGCGTCGCTCAGGCCAGCCTAA
LOC_Os02g12820
OsAffx.12011.1.S1_at--136--9811Chr02:6747368..6747392 (25 bp)
TAACACTACGAGCAACGGTACGGAT
LOC_Os02g12820
OsAffx.12011.1.S1_at--14--7011Chr02:6747351..6747375 (25 bp)
GTACGGATGCTTACCCTGTTGAAAC
LOC_Os02g12820
Target Sequence 
TTGAGAGGTTTGCTTCCTCCAGGATCAAAGAAAGACAAGGCCACAGTTCTTGCCAAGACACTAGAGTACATGAACTTGCT
GATAGCTCAAATCTCGGAGCTCGAAGCCAAGAACCGAGCACTCCAAACCCAAATCCACCAACGCGCCAATGGATCATCAT
CATCGAGATCATCAATGATCCGAACAGTCAACGAGGTTCACCATCACCATAATCACCAATGGCTAGCCGTCGCCGCCGCC
GCCGGCGGCTCGCCGGAGAGGGTGCAGGTCCATGTGATCGGCGGCGGTGATCACGACGGCGGCGCATCGGCATCGTCGTC
GTCGTCGGCGCCAGAGGTGACCGTGAGGGTGGCGGTGCGGGCGCCGGAGCGCGGCGGCGCCGACGTGTCGGAGCTCGTGC
TCCGGGTGCTCGCACTGCTCAAGGCGATGGGCGGCTTCACGGTGGTGGCCGTCGACGCGAGGCAGCCGGGCGGCGGCGGC
GGCAATGGCGTCGCTCAGGCCAGCCTAACACTACGAGCAACGGTACGGATGCTTACCCTGTTGAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12011.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis