Browse Element(s) Details


OsAffx.12300.1.S1_at

Description tigr:9630.m02967
TID=OsAffx.12300.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3093011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30900Os.49382.1.S1_at10/112+18440134..18444624Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os02g30910Os.16044.1.S1_at11/112+18448539..18451267nodulin MtN3 family protein, putative, expressed
LOC_Os02g30920NANA2+18463256..18464808hypothetical protein
LOC_Os02g30930OsAffx.12300.1.S1_at11/112+18468625..18470220hypothetical protein
LOC_Os02g30940OsAffx.2815.1.S1_at10/112+18473317..18475479hypothetical protein
LOC_Os02g30950OsAffx.24517.1.S1_at11/112+18484715..18485941hypothetical protein
LOC_Os02g30950OsAffx.18711.1.S1_at1/112+18484715..18485941hypothetical protein
LOC_Os02g30960OsAffx.24518.2.S1_x_at11/112+18489698..18492227hAT family dimerisation domain containing protein
LOC_Os02g30960OsAffx.19258.2.S1_x_at3/112+18489698..18492227hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12300.1.S1_at--366--8331Chr02:18469674..18469698 (25 bp)
GGCTGCTCTCAGTATTGGACCATAT
LOC_Os02g30930
OsAffx.12300.1.S1_at--866--591Chr02:18469699..18469723 (25 bp)
ATGCCTGGTGAATCATCTTCTTCTA
LOC_Os02g30930
OsAffx.12300.1.S1_at--770--10551Chr02:18469716..18469740 (25 bp)
TTCTTCTAGGCAGCATCTGGGCTAT
LOC_Os02g30930
OsAffx.12300.1.S1_at--1122--3571Chr02:18469783..18469807 (25 bp)
CATTTGGTTATAGTCCCACCTGTGG
LOC_Os02g30930
OsAffx.12300.1.S1_at--743--771Chr02:18469811..18469835 (25 bp)
ATGTGCTTCCTGCTCCAGTTAAGAG
LOC_Os02g30930
OsAffx.12300.1.S1_at--1000--6311Chr02:18469921..18469945 (25 bp)
GATGAATTTCTCACTCAGCCAGATC
LOC_Os02g30930
OsAffx.12300.1.S1_at--726--3211Chr02:18470004..18470028 (25 bp)
CAAGGAGGTAGGTCTTCTGTTCTCT
LOC_Os02g30930
OsAffx.12300.1.S1_at--748--7911Chr02:18470029..18470053 (25 bp)
GGTTGTGATCTGCAAGACTCGGATT
LOC_Os02g30930
OsAffx.12300.1.S1_at--928--8991Chr02:18470073..18470097 (25 bp)
TGAAGATGCTTCTGGTGCGCCTGCT
LOC_Os02g30930
OsAffx.12300.1.S1_at--413--8851Chr02:18470133..18470157 (25 bp)
TGATCTGTGTGGTGCTTCTGCTCAA
LOC_Os02g30930
OsAffx.12300.1.S1_at--518--4911Chr02:18470146..18470170 (25 bp)
GCTTCTGCTCAAGAGGTGTCCCAAA
LOC_Os02g30930
Target Sequence 
GGCTGCTCTCAGTATTGGACCATATATGCCTGGTGAATCATCTTCTTCTAGGCAGCATCTGGGCTATAGTCAGGGAATGG
AATCGGAATTGCCAGTACTTATGCTTACTCATTTGGTTATAGTCCCACCTGTGGTCCATGTGCTTCCTGCTCCAGTTAAG
AGTCCAAAAATACGGATTGACACTCCAATCACAACTGTTGGGTTAAGAAGGAGTTCTAGATTGTCTGCTTTAAATGATGG
GCACAAAGATGAATTTCTCACTCAGCCAGATCCAAATCAGGGCATTGGGAAACCTAGAGGTAAATCAGTTAAGAAATTGA
AGCAAGTGGCCAAGGAGGTAGGTCTTCTGTTCTCTGGTTGTGATCTGCAAGACTCGGATTTTGAGGAAGGGTCTACCACT
GAAGATGCTTCTGGTGCGCCTGCTGACTGCTCGTGCCTCTTTTGCAAAAAAATGGCAGTTGATCTGTGTGGTGCTTCTGC
TCAAGAGGTGTCCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis