Browse Element(s) Details


OsAffx.12370.2.S1_at

Description tigr:9630.m03453
TID=OsAffx.12370.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3620011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36170NANA2+21791799..21792944retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36180NANA2+21799127..21799579transposon protein, putative, unclassified
LOC_Os02g36190Os.23518.1.A1_at9/112+21804506..21807588Cytochrome P450 family protein, expressed
LOC_Os02g36200OsAffx.12370.2.S1_at11/112+21817005..21817721hypothetical protein
LOC_Os02g36200OsAffx.1728.1.S1_at2/112+21817005..21817721hypothetical protein
LOC_Os02g36210Os.27751.1.S1_at6/112+21835195..21841696Terpene synthase, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12370.2.S1_at--74--4151Chr02:21817035..21817059 (25 bp)
CGCTGTGCAATTTCGAGAAGGTGCA
LOC_Os02g36200
OsAffx.12370.2.S1_at--1084--192Chr02:21817044..21817068 (25 bp)
ATTTCGAGAAGGTGCAGAGTCCCAT
LOC_Os02g36200
OsAffx.12370.2.S1_at--60--1351Chr02:21817059..21817083 (25 bp)
AGAGTCCCATTGGTGGCTCCTTCAA
LOC_Os02g36200
OsAffx.12370.2.S1_at--812--31Chr02:21817067..21817091 (25 bp)
ATTGGTGGCTCCTTCAATCCCAGAG
LOC_Os02g36200
OsAffx.12370.2.S1_at--526--8332Chr02:21817073..21817097 (25 bp)
GGCTCCTTCAATCCCAGAGCTGAAA
LOC_Os02g36200
OsAffx.12370.2.S1_at--181--3052Chr02:21817082..21817106 (25 bp)
AATCCCAGAGCTGAAATGTGCTTGT
LOC_Os02g36200
OsAffx.12370.2.S1_at--668--1372Chr02:21817088..21817112 (25 bp)
AGAGCTGAAATGTGCTTGTGGGCAT
LOC_Os02g36200
OsAffx.12370.2.S1_at--403--591Chr02:21817111..21817135 (25 bp)
ATGCCGTTGCGGTGCAGACATCGAA
LOC_Os02g36200
OsAffx.12370.2.S1_at--157--6671Chr02:21817116..21817140 (25 bp)
GTTGCGGTGCAGACATCGAACACAC
LOC_Os02g36200
OsAffx.12370.2.S1_at--361--5052Chr02:21817124..21817148 (25 bp)
GCAGACATCGAACACACCAAGGAAT
LOC_Os02g36200
OsAffx.12370.2.S1_at--395--532Chr02:21817130..21817154 (25 bp)
ATCGAACACACCAAGGAATCCAAGG
LOC_Os02g36200
Target Sequence
CGCTGTGCAATTTCGAGAAGGTGCAGAGTCCCATTGGTGGCTCCTTCAATCCCAGAGCTGAAATGTGCTTGTGGGCATGC
CGTTGCGGTGCAGACATCGAACACACCAAGGAATCCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12370.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis