Browse Element(s) Details


OsAffx.12588.1.A1_at

Description tigr:9630.m05045
TID=OsAffx.12588.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g192402/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g19200NANA5+11121977..11126626retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19210Os.56089.1.S1_at1/115+11128779..11132108retrotransposon protein, putative, unclassified
LOC_Os05g19220Os.45173.1.S1_x_at3/115+11139428..11147060retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19230NANA5+11148434..11149092retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19240OsAffx.12588.1.A1_at2/115+11150645..11154929retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g19250NANA5+11161154..11165792retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g19260NANA5+11166367..11166708retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g19270OsAffx.14759.1.S1_s_at11/115+11168717..11177270DNA mismatch repair protein MSH2, putative, expressed
LOC_Os05g19280Os.6060.1.S1_at11/115+11179693..11185627expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12588.1.A1_at--39--4394Chr05:18451676..18451696 (21 bp)
CCAATAGGTCCAGGAGGCCCAGTAC
NONE
OsAffx.12588.1.A1_at--995--3091Chr02:31444651..31444675 (25 bp)
AATAGGTCCAGGAGGCCCAGTACAC
NONE
OsAffx.12588.1.A1_at--317--271Chr02:31444650..31444674 (25 bp)
ATAGGTCCAGGAGGCCCAGTACACC
NONE
OsAffx.12588.1.A1_at--1125--9211Chr02:31444645..31444669 (25 bp)
TCCAGGAGGCCCAGTACACCACTAA
NONE
OsAffx.12588.1.A1_at--215--3432Chr03:10772191..10772237 (24 bp)
CAGTACACCACTAAACCCTAGAGAC
NONE
OsAffx.12588.1.A1_at--333--7036Chr03:10772192..10772238 (24 bp)
GTACACCACTAAACCCTAGAGACAA
NONE
OsAffx.12588.1.A1_at--454--1191Chr02:31444625..31444649 (25 bp)
ACTAAACCCTAGAGACAACCCACAG
NONE
OsAffx.12588.1.A1_at--647--9831Chr02:31444623..31444647 (25 bp)
TAAACCCTAGAGACAACCCACAGGC
NONE
OsAffx.12588.1.A1_at--538--2611Chr02:31444621..31444645 (25 bp)
AACCCTAGAGACAACCCACAGGCTG
NONE
OsAffx.12588.1.A1_at--324--3711Chr02:31444617..31444641 (25 bp)
CTAGAGACAACCCACAGGCTGCATC
NONE
OsAffx.12588.1.A1_at--563--10031Chr02:31444616..31444640 (25 bp)
TAGAGACAACCCACAGGCTGCATCC
NONE
Target Sequence 
CCAATAGGTCCAGGAGGCCCAGTACACCACTAAACCCTAGAGACAACCCACAGGCTGCATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12588.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis