Browse Element(s) Details


OsAffx.13332.1.S1_x_at

Description tigr:9631.m04225
TID=OsAffx.13332.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4380011/11DIRP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43779NANA3+24456109..24456462hypothetical protein
LOC_Os03g43790NANA3+24468752..24469390hypothetical protein
LOC_Os03g43800OsAffx.13332.1.S1_x_at11/113+24471620..24488796DIRP family protein, expressed
LOC_Os03g43800OsAffx.13332.1.S1_at11/113+24471620..24488796DIRP family protein, expressed
LOC_Os03g43800Os.9648.1.A1_at11/113+24471620..24488796DIRP family protein, expressed
LOC_Os03g43800OsAffx.26050.13.S1_x_at2/113+24471620..24488796DIRP family protein, expressed
LOC_Os03g43810Os.19229.1.S1_a_at10/113+24498759..24503742Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g43814Os.54774.1.S1_x_at1/113+24511161..24511790retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13332.1.S1_x_at--968--1351Chr03:24486465..24486489 (25 bp)
AGACCTGTATAACCTTTTTGGCTAT
LOC_Os03g43800
OsAffx.13332.1.S1_x_at--268--10231Chr03:24486525..24486549 (25 bp)
TATTGAGACTTCGAGGTCCCGAGCA
LOC_Os03g43800
OsAffx.13332.1.S1_x_at--637--5511Chr03:24487790..24487814 (25 bp)
GAACAATCGCAGCACTGGCTCGGGT
LOC_Os03g43800
OsAffx.13332.1.S1_x_at--70--4811Chr03:24487807..24487831 (25 bp)
GCTCGGGTTCCAGTATACTAGGCAT
LOC_Os03g43800
OsAffx.13332.1.S1_x_at--982--2751Chr03:24487832..24487856 (25 bp)
AAGACGGATACCTCCTGATTCTGGA
LOC_Os03g43800
OsAffx.13332.1.S1_x_at--473--8531Chr03:24487853..24487877 (25 bp)
TGGACAGGCCAATTCATCTCATCAA
LOC_Os03g43800
OsAffx.13332.1.S1_x_at--807--8451Chr03:24487892..24487916 (25 bp)
TGGCCACTTTGATCCTGCAACAAAT
LOC_Os03g43800
OsAffx.13332.1.S1_x_at--614--71Chr03:24487934..24487958 (25 bp)
ATTGCCCAATGGTTGCGATTCTGAA
LOC_Os03g43800
OsAffx.13332.1.S1_x_at--73--5451Chr03:24487956..24487980 (25 bp)
GAACCGCAATTTCCCTCAGAGTTGA
LOC_Os03g43800
OsAffx.13332.1.S1_x_at--769--7471Chr03:24487988..24488012 (25 bp)
GTGTGTTGCTACGATCCTTATGATC
LOC_Os03g43800
OsAffx.13332.1.S1_x_at--147--5331Chr03:24488170..24488194 (25 bp)
GAAGTCGCGCACATCCTGGATTCAG
LOC_Os03g43800
Target Sequence 
AGACCTGTATAACCTTTTTGGCTATATTAATCAGGAATCTGGGTCCCAAGTGATGGAAGTTATTGAGACTTCGAGGTCCC
GAGCAAAATTGATGGTTGATGTTGCTATTCAGGCAATGTGCAGTGTGAGTGAAGGAGAGGATGCTTATGCCAAAGTAGGG
GAGGCACTCGATAATCTGAACAATCGCAGCACTGGCTCGGGTTCCAGTATACTAGGCATAAGACGGATACCTCCTGATTC
TGGACAGGCCAATTCATCTCATCAAGATAACACCACATCTGGCCACTTTGATCCTGCAACAAATAACATTTCTAGTCCAA
GATTGCCCAATGGTTGCGATTCTGAACCGCAATTTCCCTCAGAGTTGATTTCATCGTGTGTTGCTACGATCCTTATGATC
CAGAACTGCACGGAAAAGCAGTACCATCCTGCCGAAGTCGCGCACATCCTGGATTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13332.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis