Browse Element(s) Details


OsAffx.14440.1.S1_at

Description tigr:9632.m05527
TID=OsAffx.14440.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=oxidoreductase, 2OG-Fe(II) oxygenase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5670010/11Naringenin,2-oxoglutarate 3-dioxygenase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56670Os.15267.1.S1_at11/114+33565295..33567400U3 small nucleolar ribonucleoprotein protein IMP3, putative, expressed
LOC_Os04g56680Os.55358.1.S1_at11/114+33570364..33571315Auxin responsive protein, expressed
LOC_Os04g56690Os.55720.1.S1_at11/114+33585356..33586405Auxin responsive protein, expressed
LOC_Os04g56700OsAffx.14440.1.S1_at10/114+33590548..33593234Naringenin,2-oxoglutarate 3-dioxygenase, putative
LOC_Os04g56710Os.21764.1.S1_at11/114+33595092..33599676GTP cyclohydrolase I family protein, expressed
LOC_Os04g56720Os.18550.1.S1_at11/114+33603380..33609512Regulator of chromosome condensation family protein, expressed
LOC_Os04g56730Os.4682.1.S1_a_at11/114+33609877..33613506Repressor of RNA polymerase III transcription MAF1 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0019748biological_processsecondary metabolism
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0045486molecular_functionnaringenin 3-dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14440.1.S1_at--501--2111Chr04:33591157..33591181 (25 bp)
ACATGGACCAGAAGGTTGTCGTCAA
LOC_Os04g56700
OsAffx.14440.1.S1_at--769--4351Chr04:33591150..33591174 (25 bp)
CCAGAAGGTTGTCGTCAACTTCTAC
LOC_Os04g56700
OsAffx.14440.1.S1_at--993--9711NONE
TCAACCTCGGTGACCATGCTCACAT
NONE
OsAffx.14440.1.S1_at--207--4831Chr04:33590904..33590972 (25 bp)
GCTCACATCATGCATCTCTTAGGCA
LOC_Os04g56700
OsAffx.14440.1.S1_at--106--651Chr04:33590895..33590919 (25 bp)
ATGCATCTCTTAGGCAATGTGAACT
LOC_Os04g56700
OsAffx.14440.1.S1_at--75--7371Chr04:33590877..33590901 (25 bp)
GTGAACTTGCAGTATCTGAGCAATG
LOC_Os04g56700
OsAffx.14440.1.S1_at--1014--6151Chr04:33590851..33590875 (25 bp)
GAGGTTCAAGAACGCGGATCACCAG
LOC_Os04g56700
OsAffx.14440.1.S1_at--958--3211Chr04:33590845..33590869 (25 bp)
CAAGAACGCGGATCACCAGGCGGTG
LOC_Os04g56700
OsAffx.14440.1.S1_at--941--7491Chr04:33590823..33590847 (25 bp)
GTGGTGAACTCCGACTGCTGCCGGC
LOC_Os04g56700
OsAffx.14440.1.S1_at--278--971Chr04:33590729..33590753 (25 bp)
AGGAGCCCATACTGGAGGAGCCGAT
LOC_Os04g56700
OsAffx.14440.1.S1_at--115--3531Chr04:33590722..33590746 (25 bp)
CATACTGGAGGAGCCGATCACGTTC
LOC_Os04g56700
Target Sequence 
ACATGGACCAGAAGGTTGTCGTCAACTTCTACCCCAAGTGCCCCCAGCCCGACCTCACCCTTGGCCTCAAGCGCCACACC
GACCCCGGTACCATCACGCTCCTCCTCCAGGACCTCGTCGGCGGCCTCCAGGCCACCCGCGACGCCGGCAAGACGTGGAT
CACCGTCCAGCCCATCCCCGGCTCCTTCGTCGTCAACCTCGGTGACCATGCTCACATCATGCATCTCTTAGGCAATGTGA
ACTTGCAGTATCTGAGCAATGGGAGGTTCAAGAACGCGGATCACCAGGCGGTGGTGAACTCCGACTGCTGCCGGCTGTCG
ATCGCGACGTTCCAGAACCCGGCGCCGGACGCGATGGTGTACCCGCTGGCGGTGCGCGACGGGGAGGAGCCCATACTGGA
GGAGCCGATCACGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14440.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis