Browse Element(s) Details


OsAffx.14502.1.S1_at

Description tigr:9633.m00154
TID=OsAffx.14502.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=EndonucleaseExonucleasephosphatase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0235011/11Endonuclease/Exonuclease/phosphatase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02290NANA5+711891..713320hypothetical protein
LOC_Os05g02300Os.40422.1.S1_at11/115+716250..717121Histone H2A, putative, expressed
LOC_Os05g02310Os.10399.1.S1_at11/115+717700..721003Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os05g02320NANA5+726126..728596retrotransposon protein, putative, unclassified
LOC_Os05g02330NANA5+728926..730197retrotransposon protein, putative, unclassified
LOC_Os05g02340NANA5+730468..735045retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g02350OsAffx.14502.1.S1_at11/115+737050..741830Endonuclease/Exonuclease/phosphatase family protein
LOC_Os05g02360OsAffx.14503.1.S1_at11/115+749242..749484hypothetical protein
LOC_Os05g02370NANA5+751337..751648hypothetical protein
LOC_Os05g02380OsAffx.4235.1.S1_at10/115+755555..757894hypothetical protein
LOC_Os05g02380Os.53712.1.S1_x_at1/115+755555..757894hypothetical protein
LOC_Os05g02390Os.55911.1.S1_at11/115+761238..762121Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14502.1.S1_at--418--571Chr05:738662..738686 (25 bp)
ATCCTCAAGAGGACGCGCTTCACGC
LOC_Os05g02350
OsAffx.14502.1.S1_at--1039--7231Chr05:738600..738624 (25 bp)
GTCGCCGGAGACCATCTTGGAGCAT
LOC_Os05g02350
OsAffx.14502.1.S1_at--1124--3951Chr05:738598..738619 (22 bp)
CGGAGACCATCTTGGAGCATGACAA
LOC_Os05g02350
OsAffx.14502.1.S1_at--531--3571Chr05:738463..738487 (25 bp)
CATATGGCTCGGTGATCTGAATTAC
LOC_Os05g02350
OsAffx.14502.1.S1_at--85--7411Chr05:738452..738476 (25 bp)
GTGATCTGAATTACCGGCTGACGGG
LOC_Os05g02350
OsAffx.14502.1.S1_at--67--3151Chr05:738444..738468 (25 bp)
AATTACCGGCTGACGGGCAGCGGCA
LOC_Os05g02350
OsAffx.14502.1.S1_at--1029--2211Chr05:738395..738419 (25 bp)
ACAAGAACGACTGGCAAGCATTGCT
LOC_Os05g02350
OsAffx.14502.1.S1_at--312--9111Chr05:738258..738398 (25 bp)
TGCTGCAGAAGGATCAGTTGCGAGT
LOC_Os05g02350
OsAffx.14502.1.S1_at--1146--5311Chr05:738196..738220 (25 bp)
GAAGGGCAGATAAGCTTCCCGCCGA
LOC_Os05g02350
OsAffx.14502.1.S1_at--401--1491Chr05:738109..738133 (25 bp)
AGCAAGAAGCGCACCCCGGCATGGT
LOC_Os05g02350
OsAffx.14502.1.S1_at--527--4471Chr05:737136..737160 (25 bp)
GCCGGCGGTAACAACGCCAAGTCCG
LOC_Os05g02350
Target Sequence 
ATCCTCAAGAGGACGCGCTTCACGCGGCGGCGCCGGCTGTCCGCGCCGGCGGCGGCGGTGCCGTCGCCGGAGACCATCTT
GGAGCATGACAAGATCATATGGCTCGGTGATCTGAATTACCGGCTGACGGGCAGCGGCAGCGGCGACACGCAGGAGCTGC
TCGACAAGAACGACTGGCAAGCATTGCTGCAGAAGGATCAGTTGCGAGTGGAGCAGAGAGCCGGGCGGGTGTTCGGGGGA
TGGGAGGAAGGGCAGATAAGCTTCCCGCCGACGTACAAATACCTCGCCGACTCCGACACCTACGCCGCCGCCGCCGCCTT
CACCTCCTCCGCCAGCAAGAAGCGCACCCCGGCATGGTGTGACCGCATCCTGTGGCGCGGTTCGGGGATGGAGCAGGTGC
GGTACGCGCGCGGGGAGTCGCGGTTCTCCGACCACCGCCCCGTCAACTCCCTCTTCTCCGTGCAGCTCGCCGCCGGCGGT
AACAACGCCAAGTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14502.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis