Browse Element(s) Details


OsAffx.14597.1.S1_at

Description tigr:9633.m00781
TID=OsAffx.14597.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0879011/11MAR binding filament-like protein 1-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08770NANA5+4792004..4793434leucine-rich repeat family protein, putative, expressed
LOC_Os05g08780OsAffx.4279.1.S1_at10/115+4805303..4808732hypothetical protein
LOC_Os05g08790OsAffx.14597.1.S1_at11/115+4810056..4813556MAR binding filament-like protein 1-1, putative, expressed
LOC_Os05g08790Os.36975.3.S1_x_at1/115+4810056..4813556MAR binding filament-like protein 1-1, putative, expressed
LOC_Os05g08800OsAffx.14598.1.S1_at11/115+4815742..4817880expressed protein
LOC_Os05g08810Os.11111.1.S1_at11/115+4832231..4843629Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os05g08810Os.11111.1.S2_at11/115+4832231..4843629Phosphatidylinositol 3-kinase, root isoform, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007129biological_processsynapsis
GO:0007131biological_processmeiotic recombination
GO:0000795cellular_componentsynaptonemal complex
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0042646cellular_componentplastid nucleoid
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14597.1.S1_at--1066--1831Chr05:4810526..4810550 (25 bp)
ACGACAAGCTCTTCAAGCAGACCTT
LOC_Os05g08790
OsAffx.14597.1.S1_at--75--7991Chr05:4810472..4810496 (25 bp)
GGATGAGAGTACACAGTTCCTGTCT
LOC_Os05g08790
OsAffx.14597.1.S1_at--925--2131Chr05:4810460..4810484 (25 bp)
ACAGTTCCTGTCTGAGAGGCTGGAT
LOC_Os05g08790
OsAffx.14597.1.S1_at--605--4591Chr05:4810434..4810458 (25 bp)
GCGCAAATTCTAGGATTTCTTCTAT
LOC_Os05g08790
OsAffx.14597.1.S1_at--832--6031Chr05:4810396..4810420 (25 bp)
GAGATGCTTTCAGAGGCTCTTGAGC
LOC_Os05g08790
OsAffx.14597.1.S1_at--378--1971Chr05:4810223..4810247 (25 bp)
ACTGAGGCGGCAGATCAGCGCAAGT
LOC_Os05g08790
OsAffx.14597.1.S1_at--481--5671Chr05:4810163..4810187 (25 bp)
GACATCAAATACCTCTCAACCTGAG
LOC_Os05g08790
OsAffx.14597.1.S1_at--629--5951Chr05:4810141..4810165 (25 bp)
GAGCAAGATGTGAATGACCCTGATC
LOC_Os05g08790
OsAffx.14597.1.S1_at--878--5811Chr05:4810126..4810150 (25 bp)
GACCCTGATCAGAGTAGCAACAATA
LOC_Os05g08790
OsAffx.14597.1.S1_at--1061--3071Chr05:4810105..4810129 (25 bp)
AATACCGGTGCTGGAGACACTCGTT
LOC_Os05g08790
OsAffx.14597.1.S1_at--239--1411Chr05:4810091..4810115 (25 bp)
AGACACTCGTTCTCCTACAAGGATT
LOC_Os05g08790
Target Sequence 
ACGACAAGCTCTTCAAGCAGACCTTGATGAGGTGACCAATTCACAAAAAGAGGTGGATGAGAGTACACAGTTCCTGTCTG
AGAGGCTGGATAGCGCAAATTCTAGGATTTCTTCTATTGAACAAGAGAAAGAGATGCTTTCAGAGGCTCTTGAGCAACAA
AAGAGAAGTACAATGGAAGCTCAGAAAGATATGGAGGATGCTCAGAATCTTATGAGAATGATTGGAACGGAGAGGGAGAA
TTTTGAAACGATGTCTAAGAAACTTGAAGAGGAATTGGCCACAGCAAAAGGTGAGATATTGAGACTGAGGCGGCAGATCA
GCGCAAGTGGATATCTGAGAACAGAACTTGCGGAAACAAGTGTGACATCAAATACCTCTCAACCTGAGCAAGATGTGAAT
GACCCTGATCAGAGTAGCAACAATACCGGTGCTGGAGACACTCGTTCTCCTACAAGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis