Browse Element(s) Details


OsAffx.14598.1.S1_at

Description tigr:9633.m00782
TID=OsAffx.14598.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0880011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08770NANA5+4792004..4793434leucine-rich repeat family protein, putative, expressed
LOC_Os05g08780OsAffx.4279.1.S1_at10/115+4805303..4808732hypothetical protein
LOC_Os05g08790OsAffx.14597.1.S1_at11/115+4810056..4813556MAR binding filament-like protein 1-1, putative, expressed
LOC_Os05g08790Os.36975.3.S1_x_at1/115+4810056..4813556MAR binding filament-like protein 1-1, putative, expressed
LOC_Os05g08800OsAffx.14598.1.S1_at11/115+4815742..4817880expressed protein
LOC_Os05g08810Os.11111.1.S1_at11/115+4832231..4843629Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os05g08810Os.11111.1.S2_at11/115+4832231..4843629Phosphatidylinositol 3-kinase, root isoform, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14598.1.S1_at--112--1151Chr05:4816675..4816699 (25 bp)
AGTCCTACTGGCTGGTGAAGCTGTC
LOC_Os05g08800
OsAffx.14598.1.S1_at--455--3831Chr05:4816623..4816647 (25 bp)
CTGCTCGTCCTGCAAGAAGCTGGAT
LOC_Os05g08800
OsAffx.14598.1.S1_at--162--8271Chr05:4816600..4816622 (23 bp)
GGCAGTGACCTCTGCTTTTATCGAG
LOC_Os05g08800
OsAffx.14598.1.S1_at--839--7131Chr05:4816039..4816063 (25 bp)
GTCATTCCACGACGACTTATTCATG
LOC_Os05g08800
OsAffx.14598.1.S1_at--942--4711Chr05:4816014..4816038 (25 bp)
GCTGGAATGGCCGTGCTTGACATGA
LOC_Os05g08800
OsAffx.14598.1.S1_at--454--4111Chr05:4815965..4815989 (25 bp)
CGAAGCGCTGTGTACCGGGATAGAT
LOC_Os05g08800
OsAffx.14598.1.S1_at--3--2591Chr05:4815933..4815957 (25 bp)
AACGTAGACAATCATCGTCGCCGCT
LOC_Os05g08800
OsAffx.14598.1.S1_at--949--1711Chr05:4815899..4815923 (25 bp)
ACCACCATTGTGCTGATCTTGTAAG
LOC_Os05g08800
OsAffx.14598.1.S1_at--956--5571Chr05:4815855..4815879 (25 bp)
GAAATTCGGTGGATCGGCAGGTCAT
LOC_Os05g08800
OsAffx.14598.1.S1_at--1147--4751Chr05:4815818..4815842 (25 bp)
GCTGCATCTAGCTATCTCCAAAATT
LOC_Os05g08800
OsAffx.14598.1.S1_at--550--5891Chr05:4815782..4815806 (25 bp)
GAGCTCTGGGCTTTTAGTTTAGGGA
LOC_Os05g08800
Target Sequence 
AGTCCTACTGGCTGGTGAAGCTGTCCGGCTCCGGCGACGAGCTCCGCCGCCTCTGCTCGTCCTGCAAGAAGCTGGATGGC
AGTGACCTCTGCTTTTATCGAGGTGAGAAGGCATTCTGCAGCGGCGACTGCAGGGAGCAAGAGATCCTGATAGAGGATGA
AGAGGAGAGCAACACAGCAGTCTCCTCCCCCATTTCAATCGGCTCGTCGTCGTCATTCCACGACGACTTATTCATGGCTG
GAATGGCCGTGCTTGACATGAGCACCAGCTCCCCCCATGCCTGACCGAAGCGCTGTGTACCGGGATAGATGATCAATAAC
GTAGACAATCATCGTCGCCGCTACCACCACCACCACCATTGTGCTGATCTTGTAAGCTTGTGTTTCAGCAGTCGAGAAAT
TCGGTGGATCGGCAGGTCATGGAGGATGGGAAGCTGCATCTAGCTATCTCCAAAATTTGCCGAGCTTTGAGCTCTGGGCT
TTTAGTTTAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis