Browse Element(s) Details


OsAffx.15074.1.S1_at

Description tigr:9633.m03982
TID=OsAffx.15074.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4240011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42380OsAffx.15073.1.S1_at11/115+24735816..24737732hypothetical protein
LOC_Os05g42390OsAffx.27285.1.S1_at11/115+24749978..24750542hypothetical protein
LOC_Os05g42400OsAffx.15074.1.S1_at11/115+24752215..24752607hypothetical protein
LOC_Os05g42410OsAffx.8589.1.S1_at1/115+24755924..24759716transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g42420NANA5+24776342..24776978hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15074.1.S1_at--49--1771Chr05:24752553..24752577 (25 bp)
ACCTGGATCCGACGAGAAGAGGAGA
LOC_Os05g42400
OsAffx.15074.1.S1_at--290--1331Chr05:24752299..24752560 (25 bp)
AGAGGAGAGGCAACCGCCGATGAAA
LOC_Os05g42400
OsAffx.15074.1.S1_at--854--4051Chr05:24752282..24752305 (24 bp)
CGATGAAATCGCCATTCGAGTGTGA
LOC_Os05g42400
OsAffx.15074.1.S1_at--351--5591Chr05:24752278..24752302 (25 bp)
GAAATCGCCATTCGAGTGTGAGTTT
LOC_Os05g42400
OsAffx.15074.1.S1_at--945--531Chr05:24752275..24752299 (25 bp)
ATCGCCATTCGAGTGTGAGTTTCTC
LOC_Os05g42400
OsAffx.15074.1.S1_at--1052--4431Chr05:24752272..24752296 (25 bp)
GCCATTCGAGTGTGAGTTTCTCCTC
LOC_Os05g42400
OsAffx.15074.1.S1_at--1123--91Chr05:24752269..24752293 (25 bp)
ATTCGAGTGTGAGTTTCTCCTCCGA
LOC_Os05g42400
OsAffx.15074.1.S1_at--223--6131Chr05:24752265..24752289 (25 bp)
GAGTGTGAGTTTCTCCTCCGACGCG
LOC_Os05g42400
OsAffx.15074.1.S1_at--442--1211Chr05:24752258..24752282 (25 bp)
AGTTTCTCCTCCGACGCGCTATAGT
LOC_Os05g42400
OsAffx.15074.1.S1_at--323--9271Chr05:24752252..24752276 (25 bp)
TCCTCCGACGCGCTATAGTGCGGAT
LOC_Os05g42400
OsAffx.15074.1.S1_at--444--4231Chr05:24752248..24752272 (25 bp)
CCGACGCGCTATAGTGCGGATAGAG
LOC_Os05g42400
Target Sequence
ACCTGGATCCGACGAGAAGAGGAGAGGCAACCGCCGATGAAATCGCCATTCGAGTGTGAGTTTCTCCTCCGACGCGCTAT
AGTGCGGATAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15074.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis