Browse Element(s) Details


OsAffx.15929.1.S1_at

Description tigr:9634.m04345
TID=OsAffx.15929.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to homogentisic acid geranylgeranyl transferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4484010/11prenyltransferase, UbiA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44800OsAffx.24518.2.S1_x_at10/116+27063210..27066211hAT family dimerisation domain containing protein, expressed
LOC_Os06g44800OsAffx.19258.2.S1_x_at3/116+27063210..27066211hAT family dimerisation domain containing protein, expressed
LOC_Os06g44810Os.53397.1.S1_at11/116+27067988..27073409expressed protein
LOC_Os06g44820OsAffx.15926.1.S1_at10/116+27074173..27075641hypothetical protein
LOC_Os06g44830NANA6+27081760..27082020hypothetical protein
LOC_Os06g44840OsAffx.15929.2.S1_s_at11/116+27086520..27091920prenyltransferase, UbiA family protein, expressed
LOC_Os06g44840Os.13534.1.S1_at11/116+27086520..27091920prenyltransferase, UbiA family protein, expressed
LOC_Os06g44840OsAffx.15929.1.S1_at10/116+27086520..27091920prenyltransferase, UbiA family protein, expressed
LOC_Os06g44840Os.13534.1.S1_s_at10/116+27086520..27091920prenyltransferase, UbiA family protein, expressed
LOC_Os06g44849NANA6+27101096..27101387NA
LOC_Os06g44860OsAffx.15930.1.S1_at11/116+27113989..27115985SBP domain containing protein, expressed
LOC_Os06g44860Os.45980.1.S1_s_at1/116+27113989..27115985SBP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010189biological_processvitamin E biosynthesis
GO:0042362biological_processfat-soluble vitamin biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004659molecular_functionprenyltransferase activity
GO:0010176molecular_functionhomogentisate phytyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15929.1.S1_at--974--5691Chr06:27090365..27090454 (25 bp)
GATTAGGTCAAAAGAAGGTTTTCTG
LOC_Os06g44840
OsAffx.15929.1.S1_at--871--10291Chr06:27090449..27090473 (25 bp)
TTTCTGGATTTGTGTTGGTCTGCTC
LOC_Os06g44840
OsAffx.15929.1.S1_at--31--8611Chr06:27090464..27090488 (25 bp)
TGGTCTGCTCGAGATGGCTTATTGT
LOC_Os06g44840
OsAffx.15929.1.S1_at--1057--9371Chr06:27090472..27090496 (25 bp)
TCGAGATGGCTTATTGTGTTGCAAT
LOC_Os06g44840
OsAffx.15929.1.S1_at--300--6671Chr06:27090489..27090513 (25 bp)
GTTGCAATATTGATGGGAGCTACTT
LOC_Os06g44840
OsAffx.15929.1.S1_at--490--10231Chr06:27090496..27090520 (25 bp)
TATTGATGGGAGCTACTTCTGCCTG
LOC_Os06g44840
OsAffx.15929.1.S1_at--325--1571Chr06:27090506..27090530 (25 bp)
AGCTACTTCTGCCTGTTTGTGGAGC
LOC_Os06g44840
OsAffx.15929.1.S1_at--436--10591Chr06:27090512..27090536 (25 bp)
TTCTGCCTGTTTGTGGAGCAAATAC
LOC_Os06g44840
OsAffx.15929.1.S1_at--886--8651Chr06:27090523..27090544 (22 bp)
TGTGGAGCAAATACGCAACTGTGGT
LOC_Os06g44840
OsAffx.15929.1.S1_at--654--5131NONE
GCAAATACGCAACTGTGGTGGGACA
NONE
OsAffx.15929.1.S1_at--957--3872Chr06:27091155..27091177 (23 bp)
CTGTGGTGGGACATGCAATCCTTGC
LOC_Os06g44840
Target Sequence 
GATTAGGTCAAAAGAAGGTTTTCTGGATTTGTGTTGGTCTGCTCGAGATGGCTTATTGTGTTGCAATATTGATGGGAGCT
ACTTCTGCCTGTTTGTGGAGCAAATACGCAACTGTGGTGGGACATGCAATCCTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15929.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis