Browse Element(s) Details


OsAffx.16306.1.S1_at

Description tigr:9635.m01727
TID=OsAffx.16306.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1718011/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17160OsAffx.16305.1.S1_at10/117+10088952..10091708hypothetical protein
LOC_Os07g17160OsAffx.28486.1.S1_at1/117+10088952..10091708hypothetical protein
LOC_Os07g17170OsAffx.28486.1.S1_at10/117+10096061..10098251hypothetical protein
LOC_Os07g17180OsAffx.16306.1.S1_at11/117+10107914..10109731No apical meristem protein
LOC_Os07g17189NANA7+10118574..10119009NA
LOC_Os07g17200NANA7+10123288..10123626hypothetical protein
LOC_Os07g17210OsAffx.28487.1.S1_at11/117+10126641..10135779chromatin assembly factor-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16306.1.S1_at--726--6491Chr07:10109195..10109219 (25 bp)
GATAGCTCTGAAGGCCCTGATCAGG
LOC_Os07g17180
OsAffx.16306.1.S1_at--379--4791Chr07:10109223..10109247 (25 bp)
GCTCCGTTGTGATGCATGATTCTTC
LOC_Os07g17180
OsAffx.16306.1.S1_at--603--9131Chr07:10109248..10109272 (25 bp)
TGCGGTGTTTACTCATCTGTCAGAC
LOC_Os07g17180
OsAffx.16306.1.S1_at--955--5371Chr07:10109294..10109318 (25 bp)
GAAGAAGCTGATCGTCCTGATGCGC
LOC_Os07g17180
OsAffx.16306.1.S1_at--1018--8851Chr07:10109311..10109335 (25 bp)
TGATGCGCCGGCTGGGACTATGTCA
LOC_Os07g17180
OsAffx.16306.1.S1_at--924--4311Chr07:10109355..10109379 (25 bp)
CCTTGTCTGATTTCGAGTTCCCAGA
LOC_Os07g17180
OsAffx.16306.1.S1_at--1010--1271Chr07:10109419..10109443 (25 bp)
AGATCAGTGCTCTTCCAACGTGATG
LOC_Os07g17180
OsAffx.16306.1.S1_at--294--8831Chr07:10109446..10109470 (25 bp)
TGATTCTTCCATGGTGTTTAGTCAC
LOC_Os07g17180
OsAffx.16306.1.S1_at--567--9671Chr07:10109467..10109491 (25 bp)
TCACCTTGAAGACCTGATTACCCTA
LOC_Os07g17180
OsAffx.16306.1.S1_at--125--8291Chr07:10109593..10109617 (25 bp)
GGCATTGTCTGATTTCGAGTTCCCA
LOC_Os07g17180
OsAffx.16306.1.S1_at--267--1811Chr07:10109664..10109688 (25 bp)
ACCCGAGCTGCTTGGATATGGAGTT
LOC_Os07g17180
Target Sequence 
GATAGCTCTGAAGGCCCTGATCAGGGATGCTCCGTTGTGATGCATGATTCTTCTGCGGTGTTTACTCATCTGTCAGACCC
GATCGTCCTGCCAGAAGAAGAAGAAGCTGATCGTCCTGATGCGCCGGCTGGGACTATGTCACTAGACTATCAGAACTACT
CCTTGTCTGATTTCGAGTTCCCAGAGTACCCTCTGCTCGATGTTGCCGGTGATGCTGACGGCGCAGATCAGTGCTCTTCC
AACGTGATGGATGATTCTTCCATGGTGTTTAGTCACCTTGAAGACCTGATTACCCTACCAGCAGAGGAAGCAGAAGCCGA
TGCTTGTAGTGCAGCGCCTGCGCCGTCGCTGGACAACCAAAAATACTCCTCACAGGGCATCATCGACAGTGAGGCGCCGG
CATTGTCTGATTTCGAGTTCCCAGAGACCATTGATGAGGTTCTAAACAGCATCAACTTCACAATGGCCGACCCGAGCTGC
TTGGATATGGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis