Browse Element(s) Details


OsAffx.16588.1.S1_at

Description tigr:9635.m03634
TID=OsAffx.16588.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3673011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36700Os.15704.1.S1_at2/117+21987389..21990062Cellulose synthase family protein
LOC_Os07g36700OsAffx.16586.1.S1_x_at1/117+21987389..21990062Cellulose synthase family protein
LOC_Os07g36710NANA7+21991717..21994128retrotransposon protein, putative, unclassified
LOC_Os07g36720NANA7+21995956..22000572retrotransposon protein, putative, unclassified
LOC_Os07g36730OsAffx.16588.1.S1_at11/117+22001342..22001611hypothetical protein
LOC_Os07g36740NANA7+22004368..22010419Cellulose synthase family protein
LOC_Os07g36750OsAffx.5550.1.S1_at11/117+22014108..22017490Cellulose synthase family protein, expressed
LOC_Os07g36760NANA7+22023107..22025397retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16588.1.S1_at--948--1111Chr07:22001531..22001555 (25 bp)
AGTCGGCACCGCTCGCGTTGACGGA
LOC_Os07g36730
OsAffx.16588.1.S1_at--1136--8231Chr07:22001527..22001551 (25 bp)
GGCACCGCTCGCGTTGACGGAGAAT
LOC_Os07g36730
OsAffx.16588.1.S1_at--972--4131Chr07:22001522..22001546 (25 bp)
CGCTCGCGTTGACGGAGAATCCCGA
LOC_Os07g36730
OsAffx.16588.1.S1_at--12--9331Chr07:22001519..22001543 (25 bp)
TCGCGTTGACGGAGAATCCCGAGGA
LOC_Os07g36730
OsAffx.16588.1.S1_at--546--9312Chr08:24450320..24450339 (20 bp)
TCCCGAGGAGGCGACGAGCACATGC
NONE
OsAffx.16588.1.S1_at--742--4091Chr07:22001492..22001516 (25 bp)
CGACGAGCACATGCCGAGGCTTGGA
LOC_Os07g36730
OsAffx.16588.1.S1_at--1045--1491Chr07:22001487..22001511 (25 bp)
AGCACATGCCGAGGCTTGGACCCAG
LOC_Os07g36730
OsAffx.16588.1.S1_at--828--591Chr07:22001482..22001506 (25 bp)
ATGCCGAGGCTTGGACCCAGCTTTG
LOC_Os07g36730
OsAffx.16588.1.S1_at--1108--4211Chr07:22001479..22001503 (25 bp)
CCGAGGCTTGGACCCAGCTTTGTCA
LOC_Os07g36730
OsAffx.16588.1.S1_at--845--4771Chr07:22001408..22001432 (25 bp)
GCTCCTTCAACACCATCTCGTGCAG
LOC_Os07g36730
OsAffx.16588.1.S1_at--212--9312Chr08:20218310..20218385 (24 bp)
TCCCCCTCGGTGTGCCAGCAGGAGG
NONE
Target Sequence 
AGTCGGCACCGCTCGCGTTGACGGAGAATCCCGAGGAGGCGACGAGCACATGCCGAGGCTTGGACCCAGCTTTGTCAGCG
GGATAAAGGGGGGACTCGACGAAGGCGGTGGAGCTCTCCTCCTGCTCCTTCAACACCATCTCGTGCAGCTTCCCCCTCGG
TGTGCCAGCAGGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16588.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis