Browse Element(s) Details


OsAffx.16865.1.S1_at

Description tigr:9636.m00636
TID=OsAffx.16865.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ABC transporter, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0701011/11ABC-2 type transporter family protein, expressed
LOC_Os03g370001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07000NANA8+3901618..3904182retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g07010OsAffx.16865.1.S1_at11/118+3922402..3927219ABC-2 type transporter family protein, expressed
LOC_Os08g07010OsAffx.16865.1.S1_x_at11/118+3922402..3927219ABC-2 type transporter family protein, expressed
LOC_Os08g07020OsAffx.29071.1.S1_at11/118+3930047..3930877hypothetical protein
LOC_Os08g07030OsAffx.16866.1.S1_at11/118+3933836..3934069hypothetical protein
LOC_Os08g07040OsAffx.16867.1.S1_at11/118+3934777..3938452expressed protein
LOC_Os08g07050NANA8+3939587..3940141hypothetical protein
LOC_Os08g07060Os.51132.1.S1_at11/118+3942695..3944788expressed protein
LOC_Os08g07070OsAffx.5729.1.S1_at11/118+3945013..3945976expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16865.1.S1_at--387--9372Chr08:3926248..3926272 (25 bp)
TCGAGCGCCCCATGCTGGTGAAGGA
LOC_Os08g07010
OsAffx.16865.1.S1_at--917--4331Chr08:3926257..3926281 (25 bp)
CCATGCTGGTGAAGGAGAGGTCGTC
LOC_Os08g07010
OsAffx.16865.1.S1_at--507--7211Chr08:3926364..3926388 (25 bp)
GTCGTCATCCTCTACTGGATGGGCG
LOC_Os08g07010
OsAffx.16865.1.S1_at--838--9251Chr08:3926371..3926395 (25 bp)
TCCTCTACTGGATGGGCGGCCTCGA
LOC_Os08g07010
OsAffx.16865.1.S1_at--1086--1351Chr08:3926458..3926482 (25 bp)
AGAGCCTCGGGCTCGCCATTGGCGC
LOC_Os08g07010
OsAffx.16865.1.S1_at--536--9431Chr08:3926464..3926488 (25 bp)
TCGGGCTCGCCATTGGCGCCGTGCT
LOC_Os08g07010
OsAffx.16865.1.S1_at--877--7711Chr08:3926596..3926620 (25 bp)
GGTGGCTCAACTACAGCTTCTACTG
LOC_Os08g07010
OsAffx.16865.1.S1_at--975--8311Chr08:3926599..3926623 (25 bp)
GGCTCAACTACAGCTTCTACTGCTA
LOC_Os08g07010
OsAffx.16865.1.S1_at--507--9711Chr08:3926602..3926626 (25 bp)
TCAACTACAGCTTCTACTGCTACCG
LOC_Os08g07010
OsAffx.16865.1.S1_at--657--3751Chr08:3926631..3926655 (25 bp)
CTCATCGGCATCCAGTTCGGCGACG
LOC_Os08g07010
OsAffx.16865.1.S1_at--249--9431Chr08:3926728..3926752 (25 bp)
TCGGGCTCAACAACCACTGGGTCGA
LOC_Os08g07010
Target Sequence 
TCGAGCGCCCCATGCTGGTGAAGGAGAGGTCGTCGGGGATGTACCGCCTCTCCTCCTACTTCGCCGCGCGCACCGCCGCC
GACCTACCCATGGAGCTCGCCCTCCCCACCGCCTTCGTCGTCATCCTCTACTGGATGGGCGGCCTCGACCCGCGCCCTGG
CCCCTTCCTCCTCTCCCTCCTCGTCGTCCTCTACAGCGTCCTCGTCGCCCAGAGCCTCGGGCTCGCCATTGGCGCCGTGC
TCATGGACGTCAAGCAGGGCACCACCCTCGCCTCCGTCATCACCATGGTCTTCCTCATCGCCGGCGGCTACTACGTCCAG
CACATCCCGCCCTTCGTCGGCTGGCTCCGGTGGCTCAACTACAGCTTCTACTGCTACCGCCTCCTCATCGGCATCCAGTT
CGGCGACGGCGCCGCCCACTACGACTGCGGCGGCGGCGGCGCGCGCTGCCTCGTCGCCGACTTCCCGGCCATCAAGGCCG
TCGGGCTCAACAACCACTGGGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16865.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis