Browse Element(s) Details


OsAffx.16995.1.S1_at

Description tigr:9636.m01449
TID=OsAffx.16995.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1450011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14470NANA8+8683308..8689463transposon protein, putative, unclassified
LOC_Os08g14480NANA8+8690093..8693327transposon protein, putative, unclassified
LOC_Os08g14490Os.49256.1.S1_at11/118+8697456..87025984'-phosphopantetheinyl transferase superfamily protein, expressed
LOC_Os08g14500OsAffx.16995.1.S1_at11/118+8709387..8709593hypothetical protein
LOC_Os08g14510NANA8+8718621..8719049hypothetical protein
LOC_Os08g14520OsAffx.15648.1.S1_at1/118+8719416..8720482hypothetical protein
LOC_Os08g14530NANA8+8725622..8732365retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16995.1.S1_at--49--10711Chr08:8709418..8709442 (25 bp)
TTGCGGCCAAGCTCGCACTCATCGG
LOC_Os08g14500
OsAffx.16995.1.S1_at--766--2691Chr08:8709426..8709450 (25 bp)
AAGCTCGCACTCATCGGCTCGAGTG
LOC_Os08g14500
OsAffx.16995.1.S1_at--1075--9591Chr08:8709436..8709460 (25 bp)
TCATCGGCTCGAGTGACACGACTTC
LOC_Os08g14500
OsAffx.16995.1.S1_at--624--6111Chr08:8709446..8709470 (25 bp)
GAGTGACACGACTTCACGCATGCAG
LOC_Os08g14500
OsAffx.16995.1.S1_at--690--5691Chr08:8709455..8709479 (25 bp)
GACTTCACGCATGCAGCACAATTTG
LOC_Os08g14500
OsAffx.16995.1.S1_at--217--4991Chr08:8709463..8709487 (25 bp)
GCATGCAGCACAATTTGAAGCGCAA
LOC_Os08g14500
OsAffx.16995.1.S1_at--834--5411Chr08:8709479..8709503 (25 bp)
GAAGCGCAAGCTTGTGTTTGTGCGT
LOC_Os08g14500
OsAffx.16995.1.S1_at--42--3251Chr08:8709485..8709509 (25 bp)
CAAGCTTGTGTTTGTGCGTGAGAAG
LOC_Os08g14500
OsAffx.16995.1.S1_at--1011--1451Chr08:8709505..8709529 (25 bp)
AGAAGGGTCTTGTGTCGGCTGAGGC
LOC_Os08g14500
OsAffx.16995.1.S1_at--749--3931Chr08:8709520..8709544 (25 bp)
CGGCTGAGGCAGTTGCGGCGTACAA
LOC_Os08g14500
OsAffx.16995.1.S1_at--1134--1191Chr08:8709530..8709554 (25 bp)
AGTTGCGGCGTACAACGCCCTCTTC
LOC_Os08g14500
Target Sequence
TTGCGGCCAAGCTCGCACTCATCGGCTCGAGTGACACGACTTCACGCATGCAGCACAATTTGAAGCGCAAGCTTGTGTTT
GTGCGTGAGAAGGGTCTTGTGTCGGCTGAGGCAGTTGCGGCGTACAACGCCCTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis