Browse Element(s) Details


OsAffx.1728.1.S1_at

Description gb:NM_184216.1
DB_XREF= gi:34895523
TID=OsAffx.1728.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g362002/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36170NANA2+21791799..21792944retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36180NANA2+21799127..21799579transposon protein, putative, unclassified
LOC_Os02g36190Os.23518.1.A1_at9/112+21804506..21807588Cytochrome P450 family protein, expressed
LOC_Os02g36200OsAffx.12370.2.S1_at11/112+21817005..21817721hypothetical protein
LOC_Os02g36200OsAffx.1728.1.S1_at2/112+21817005..21817721hypothetical protein
LOC_Os02g36210Os.27751.1.S1_at6/112+21835195..21841696Terpene synthase, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1728.1.S1_at--891--2811NONE
AAGTTGGCAGAGACGGATCAACGCG
NONE
OsAffx.1728.1.S1_at--711--6451Chr01:1593991..1594015 (25 bp)
GATCAACGCGGCAACGAGTTTGGAG
NONE
OsAffx.1728.1.S1_at--751--5151Chr01:1593981..1594005 (25 bp)
GCAACGAGTTTGGAGGCGAGCTATA
NONE
OsAffx.1728.1.S1_at--1159--3451Chr01:1593955..1593979 (25 bp)
CAGTGGCAGTGGTCGCTCTGCAATT
NONE
OsAffx.1728.1.S1_at--882--7791Chr01:1593947..1593969 (23 bp)
GGTCGCTCTGCAATTTCGAGAAGAA
NONE
OsAffx.1728.1.S1_at--984--9192Chr02:21817268..21817292 (25 bp)
TGCCTTGTGGATTTGGGAAGATCTC
LOC_Os02g36200
OsAffx.1728.1.S1_at--1121--972Chr02:21817309..21817333 (25 bp)
AGGAGATGGTCGCTTACTGTCATGC
LOC_Os02g36200
OsAffx.1728.1.S1_at--1112--1951Chr01:1593656..1593680 (25 bp)
ACTGTCATGCTGACGAGTACGACTA
NONE
OsAffx.1728.1.S1_at--614--6991Chr01:1593640..1593664 (25 bp)
GTACGACTATCTTAGAGAGACATGC
NONE
OsAffx.1728.1.S1_at--197--5991Chr01:1593624..1593648 (25 bp)
GAGACATGCGACAGTTTGCGCCAGT
NONE
OsAffx.1728.1.S1_at--342--6851Chr01:1593611..1593635 (25 bp)
GTTTGCGCCAGTTTATAGCAGATCA
NONE
Target Sequence 
AAGTTGGCAGAGACGGATCAACGCGGCAACGAGTTTGGAGGCGAGCTATACCAGTGGCAGTGGTCGCTCTGCAATTTCGA
GAAGAATTGTAGATGTGCCTTGTGGATTTGGGAAGATCTCAACGAATACGTTGAGGAGATGGTCGCTTACTGTCATGCTG
ACGAGTACGACTATCTTAGAGAGACATGCGACAGTTTGCGCCAGTTTATAGCAGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis