Browse Element(s) Details


OsAffx.17713.1.S1_at

Description tigr:9637.m01248
TID=OsAffx.17713.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1526011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15250Os.50616.1.S2_x_at11/119+9263205..9268413retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15250Os.50616.1.S1_x_at11/119+9263205..9268413retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15250Os.50616.1.S2_at8/119+9263205..9268413retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15260OsAffx.17713.1.S1_at11/119+9282476..9283035hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17713.1.S1_at--231--3251Chr09:9282507..9282531 (25 bp)
CAAGCCTGGGAACTGCACATGAAGA
LOC_Os09g15260
OsAffx.17713.1.S1_at--385--7851Chr09:9282532..9282849 (25 bp)
GGTAGAATATCTAAACACAGTCATA
LOC_Os09g15260
OsAffx.17713.1.S1_at--848--2131Chr09:9282841..9282865 (25 bp)
ACAGTCATAGACAACCCAGCGGCGT
LOC_Os09g15260
OsAffx.17713.1.S1_at--837--271Chr09:9282847..9282871 (25 bp)
ATAGACAACCCAGCGGCGTATAACC
LOC_Os09g15260
OsAffx.17713.1.S1_at--385--6751Chr09:9282864..9282888 (25 bp)
GTATAACCGACCTCCACGAGAAGGG
LOC_Os09g15260
OsAffx.17713.1.S1_at--380--5831Chr09:9282872..9282896 (25 bp)
GACCTCCACGAGAAGGGCTTGCTGC
LOC_Os09g15260
OsAffx.17713.1.S1_at--1--5331Chr09:9282883..9282907 (25 bp)
GAAGGGCTTGCTGCTGCTAGTAAGT
LOC_Os09g15260
OsAffx.17713.1.S1_at--661--3771Chr09:9282896..9282920 (25 bp)
CTGCTAGTAAGTGGCAGTGCGAGTT
LOC_Os09g15260
OsAffx.17713.1.S1_at--413--5711Chr09:9282964..9282988 (25 bp)
GACGACCTCCGGAACAAACCTTGCT
LOC_Os09g15260
OsAffx.17713.1.S1_at--295--8171Chr09:9282974..9282998 (25 bp)
GGAACAAACCTTGCTCTGAGAACAA
LOC_Os09g15260
OsAffx.17713.1.S1_at--1126--1731Chr09:9282981..9283005 (25 bp)
ACCTTGCTCTGAGAACAAACCTTGC
LOC_Os09g15260
Target Sequence 
CAAGCCTGGGAACTGCACATGAAGAGGTAGAATATCTAAACACAGTCATAGACAACCCAGCGGCGTATAACCGACCTCCA
CGAGAAGGGCTTGCTGCTGCTAGTAAGTGGCAGTGCGAGTTGGATGGGATTGCAGCGCTGGCGGTAGGGCACCGCCGGTG
CCCCGACGACCTCCGGAACAAACCTTGCTCTGAGAACAAACCTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17713.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis