Browse Element(s) Details


OsAffx.17771.1.S1_at

Description tigr:9637.m01584
TID=OsAffx.17771.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=oxidoreductase, 2OG-Fe(II) oxygenase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g183904/11Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g18360Os.19031.1.A1_at11/119+11257657..11267042Protein kinase domain containing protein, expressed
LOC_Os09g18360OsAffx.9066.1.S1_x_at1/119+11257657..11267042Protein kinase domain containing protein, expressed
LOC_Os09g18370Os.47463.1.S1_x_at6/119+11273886..11277583transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18370Os.14491.2.S1_x_at5/119+11273886..11277583transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18380NANA9+11280227..11283533transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18390OsAffx.17771.1.S1_at4/119+11287811..11289840Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os09g18400OsAffx.29914.1.S1_at10/119+11291525..11292537hypothetical protein
LOC_Os09g18410OsAffx.29915.1.S1_at11/119+11294780..11297489hypothetical protein
LOC_Os09g18420OsAffx.17772.1.S1_at11/119+11298244..11298945hypothetical protein
LOC_Os09g18430NANA9+11301964..11303307transposon protein, putative, Pong sub-class
LOC_Os09g18440NANA9+11303719..11305889transposon protein, putative, Pong sub-class
LOC_Os09g18450OsAffx.6325.1.S1_at11/119+11308092..11309728oxidoreductase, 2OG-Fe oxygenase family protein

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0010261biological_processorgan senescence (sensu Magnoliophyta)
GO:0016682molecular_functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17771.1.S1_at--645--191Chr09:11289545..11289569 (25 bp)
ATTTCTTCGAGCTACCGCTGGAGGA
LOC_Os09g18390
OsAffx.17771.1.S1_at--913--2211Chr09:11289569..11289593 (25 bp)
ACAAGAACGCTGTGGCTGTCTGTCC
LOC_Os09g18390
OsAffx.17771.1.S1_at--951--8711Chr09:11289585..11289609 (25 bp)
TGTCTGTCCAGATGGCGGCATTGAA
LOC_Os09g18390
OsAffx.17771.1.S1_at--445--5311Chr09:11289607..11289631 (25 bp)
GAAGGATTTGGCCACCACTTCAGAA
LOC_Os09g18390
OsAffx.17771.1.S1_at--974--10231Chr09:11289707..11290142 (25 bp)
TTTGGCCAATCAATGATACGCCTGG
NONE
OsAffx.17771.1.S1_at--964--311Chr09:11290133..11290157 (25 bp)
ATACGCCTGGCCTGCAGATTAGCAA
NONE
OsAffx.17771.1.S1_at--79--151Chr09:11290150..11290174 (25 bp)
ATTAGCAAGGATGGCCGGTGGCACC
NONE
OsAffx.17771.1.S1_at--652--2851Chr09:11290191..11290215 (25 bp)
AAGTGCCTTCGTGATCAATGTCGGT
NONE
OsAffx.17771.1.S1_at--765--7751Chr09:11290305..11290329 (25 bp)
GGTGTTCCAGGACGCATGTATCAAT
NONE
OsAffx.17771.1.S1_at--1067--9611Chr09:11290371..11290395 (25 bp)
TCATGCGATCGACAGGTTGGAGTAT
NONE
OsAffx.17771.1.S1_at--429--10211Chr09:11290393..11290417 (25 bp)
TATTCCAAGGGCCACGCAACAGAAA
NONE
Target Sequence 
ATTTCTTCGAGCTACCGCTGGAGGACAAGAACGCTGTGGCTGTCTGTCCAGATGGCGGCATTGAAGGATTTGGCCACCAC
TTCAGAACATCAGCTGATAAATTGGACTGGGCAGAGAACTTGATCGTTGAAACGCAGCCAATTGAGAGAAGGAAACTCGA
ATTTTGGCCAATCAATGATACGCCTGGCCTGCAGATTAGCAAGGATGGCCGGTGGCACCCCGTGCGGCCACAGACAAGTG
CCTTCGTGATCAATGTCGGTGAGATCCTAGAGGTTCTCACCAATGGCCACTATAAGAGCGTGTTCCACAGAGTGGTCGTC
GACACCGAGAGGGGTCGGGATACCATTGTGGTGTTCCAGGACGCATGTATCAATGGAGTGGTCAAGCCACTACTGGAGCT
CGGCGAGGCACGATATCATGCGATCGACAGGTTGGAGTATTCCAAGGGCCACGCAACAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17771.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis