Browse Element(s) Details


OsAffx.18024.1.S1_x_at

Description tigr:9637.m03150
TID=OsAffx.18024.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3720011/11Transferase family protein, expressed
LOC_Os09g371804/11Transferase family protein, expressed
LOC_Os05g025901/11Transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37170NANA9+21437297..21443368retrotransposon protein, putative, unclassified
LOC_Os09g37180Os.53328.1.S1_at11/119+21450103..21452158Transferase family protein, expressed
LOC_Os09g37180OsAffx.18024.1.S1_x_at4/119+21450103..21452158Transferase family protein, expressed
LOC_Os09g37200OsAffx.18024.1.S1_x_at11/119+21463220..21464578Transferase family protein, expressed
LOC_Os09g37210NANA9+21473144..21476460transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g37220Os.47463.1.S1_x_at5/119+21479161..21482858transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g37220Os.14491.2.S1_x_at5/119+21479161..21482858transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g37230Os.18663.1.S1_at11/119+21487680..21494865protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18024.1.S1_x_at--168--6752Chr09:21464017..21464041 (25 bp)
GTTCAGCCGGTTCGAGACCATCCTC
LOC_Os09g37200
OsAffx.18024.1.S1_x_at--821--1911Chr09:21464046..21464070 (25 bp)
ACGTGTGGCGCACCATGACGCGGGC
LOC_Os09g37200
OsAffx.18024.1.S1_x_at--894--7671Chr09:21464150..21464174 (25 bp)
GGGTACTTCGGCAACCTCGTCCTCT
LOC_Os09g37200
OsAffx.18024.1.S1_x_at--190--1511Chr09:21464223..21464247 (25 bp)
AGCACGCGGCGCAGGTGATCCACGA
LOC_Os09g37200
OsAffx.18024.1.S1_x_at--216--4291Chr09:21464270..21464294 (25 bp)
GCCTACTTCCGGTCGTTCGTCGACT
LOC_Os09g37200
OsAffx.18024.1.S1_x_at--142--7811Chr09:21464280..21464304 (25 bp)
GGTCGTTCGTCGACTTCGCGAGCTC
LOC_Os09g37200
OsAffx.18024.1.S1_x_at--53--1811Chr09:21464336..21464360 (25 bp)
ACCGCCGTGCTCAAGGACGTGCTGT
LOC_Os09g37200
OsAffx.18024.1.S1_x_at--179--2911Chr09:21464348..21464372 (25 bp)
AAGGACGTGCTGTGCCCCGACCTGG
LOC_Os09g37200
OsAffx.18024.1.S1_x_at--225--6152Chr09:21464372..21464396 (25 bp)
GAGGTGGACAGCTGGCTCACCTTCC
LOC_Os09g37200
OsAffx.18024.1.S1_x_at--251--9273Chr09:21464394..21464418 (25 bp)
TCCCGTTCTACGAGCTCGACTTCGG
LOC_Os09g37200
OsAffx.18024.1.S1_x_at--78--7992Chr09:21464466..21464490 (25 bp)
GGATGCTGTTCCTGGTGCCGTCGTA
LOC_Os09g37200
Target Sequence 
GTTCAGCCGGTTCGAGACCATCCTCGCCCACGTGTGGCGCACCATGACGCGGGCGCGGGGGCTCGGCAACCCGCTCCAGA
GCTCCACCATCCGCATCTCCGTCGACGGCCGGCAGCGGCTGTCGGCGCCGGCGGGGTACTTCGGCAACCTCGTCCTCTGG
GCGTTCCCGCGCGCCACCGTGGGGGACCTCCTCGGGCGGCCGCTGAAGCACGCGGCGCAGGTGATCCACGACGCCGTCGC
CCGCGCCGACGCCGCCTACTTCCGGTCGTTCGTCGACTTCGCGAGCTCCGGCGCCGTCGAGGGCGAGGGGCTCGCCCCGA
CCGCCGTGCTCAAGGACGTGCTGTGCCCCGACCTGGAGGTGGACAGCTGGCTCACCTTCCCGTTCTACGAGCTCGACTTC
GGCGGCGGCTGCCCGACCTACTTCATGCCGTCCTACTTCCCGACGGAGGGGATGCTGTTCCTGGTGCCGTCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18024.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis