Browse Element(s) Details


OsAffx.18182.1.S1_at

Description tigr:9638.m00781
TID=OsAffx.18182.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0910011/11Cytochrome P450 76C4, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09050OsAffx.20877.1.S1_at1/1110+4664225..4666248hypothetical protein
LOC_Os10g09060NANA10+4668502..4672011retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09070NANA10+4672698..4674013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09080NANA10+4677439..4678207hypothetical protein
LOC_Os10g09090Os.46504.1.S1_at11/1110+4680394..4683463Cytochrome P450 family protein, expressed
LOC_Os10g09100OsAffx.18182.1.S1_at11/1110+4685917..4686363Cytochrome P450 76C4, putative
LOC_Os10g09110Os.46470.2.S1_at11/1110+4695326..4697230Cytochrome P450 family protein, expressed
LOC_Os10g09110Os.46470.2.S1_x_at11/1110+4695326..4697230Cytochrome P450 family protein, expressed
LOC_Os10g09110Os.46470.1.S1_at11/1110+4695326..4697230Cytochrome P450 family protein, expressed
LOC_Os10g09130OsAffx.30352.1.S1_at11/1110+4703327..4705074hypothetical protein
LOC_Os10g09130Os.39421.1.S1_at3/1110+4703327..4705074hypothetical protein
LOC_Os10g09130OsAffx.20967.1.S1_x_at1/1110+4703327..4705074hypothetical protein
LOC_Os10g09140NANA10+4706608..4707878hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18182.1.S1_at--804--10811Chr10:4686302..4686326 (25 bp)
TTGTCTTCATCATCTCCTACATCTT
LOC_Os10g09100
OsAffx.18182.1.S1_at--45--9891Chr10:4686285..4686309 (25 bp)
TACATCTTCCAACCTCTGCTCGATG
LOC_Os10g09100
OsAffx.18182.1.S1_at--809--8411Chr10:4686153..4686177 (25 bp)
GGCCCGCTCATGTCCATAAGGCTCG
LOC_Os10g09100
OsAffx.18182.1.S1_at--381--9631Chr10:4686146..4686170 (25 bp)
TCATGTCCATAAGGCTCGGCGGCGT
LOC_Os10g09100
OsAffx.18182.1.S1_at--10--8711Chr10:4686143..4686167 (25 bp)
TGTCCATAAGGCTCGGCGGCGTCCG
LOC_Os10g09100
OsAffx.18182.1.S1_at--400--9051Chr10:4686077..4686101 (25 bp)
TGCAGAGGAACAACGCCGACATCAC
LOC_Os10g09100
OsAffx.18182.1.S1_at--1060--3951Chr10:4686043..4686067 (25 bp)
CGGTATGGACTCGTGGCACGCCTGC
LOC_Os10g09100
OsAffx.18182.1.S1_at--117--4731Chr10:4685992..4686016 (25 bp)
GCTGTGGCCGCGCTGGAAGTGGTGC
LOC_Os10g09100
OsAffx.18182.1.S1_at--166--1111Chr10:4685975..4685999 (25 bp)
AGTGGTGCGCCATGAGAATGCTCTG
LOC_Os10g09100
OsAffx.18182.1.S1_at--1007--4551Chr10:4685969..4685993 (25 bp)
GCGCCATGAGAATGCTCTGCACGGA
LOC_Os10g09100
OsAffx.18182.1.S1_at--1118--3331Chr10:4685950..4685974 (25 bp)
CACGGAGGAGCTGCTTGTTAGGATT
LOC_Os10g09100
Target Sequence 
TTGTCTTCATCATCTCCTACATCTTCCAACCTCTGCTCGATGCTCGCCGCCGTTTTCCGCCAGGACCTCACCGGCTGCCG
GTCATCAGCAACCTCCACAACATCGGCAAGAACCCGCACCACGCGTTCGCTCGCCTCGCCGACCGCTATGGCCCGCTCAT
GTCCATAAGGCTCGGCGGCGTCCGCGCCGTGGTCGCCATGTCCGCGGACGCCGCGAGGGAGATCCTGCAGAGGAACAACG
CCGACATCACCGGCCGCGGCGGTATGGACTCGTGGCACGCCTGCGGCCACCACGCCAACTCCAGCATCGCGCTGTGGCCG
CGCTGGAAGTGGTGCGCCATGAGAATGCTCTGCACGGAGGAGCTGCTTGTTAGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis