Browse Element(s) Details


OsAffx.18813.1.S1_at

Description tigr:9639.m01149
TID=OsAffx.18813.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1203011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g12000Os.52223.1.S1_at11/1111+6663976..6676628NBS-LRR disease resistance protein, putative, expressed
LOC_Os11g12010Os.52020.1.S1_at11/1111+6681134..6683109expressed protein
LOC_Os11g12020NANA11+6685754..6686150NBS-LRR type disease resistance protein, putative
LOC_Os11g12030OsAffx.18813.1.S1_at11/1111+6687915..6689380hypothetical protein
LOC_Os11g12040OsAffx.7091.1.S1_at8/1111+6690946..6693393NB-ARC domain containing protein, expressed
LOC_Os11g12040Os.12614.1.A1_at1/1111+6690946..6693393NB-ARC domain containing protein, expressed
LOC_Os11g12050Os.54085.1.S1_at11/1111+6698615..6704342NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g12060OsAffx.22947.1.S1_x_at1/1111+6708072..6712523retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g12060Os.8606.1.S1_at1/1111+6708072..6712523retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g12070NANA11+6712808..6714073retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18813.1.S1_at--629--10331Chr11:6689321..6689345 (25 bp)
TTTAGCAGGAATAGCTTCATTCACA
LOC_Os11g12030
OsAffx.18813.1.S1_at--406--10552Chr11:6865208..6865688 (25 bp)
TTCATTCACAATCAAGAGCCCGTCT
NONE
OsAffx.18813.1.S1_at--418--1372Chr11:6865194..6865218 (25 bp)
AGAGCCCGTCTGTAACAGCAGATGA
NONE
OsAffx.18813.1.S1_at--94--692Chr11:6865173..6865197 (25 bp)
ATGAGCTGGTGATACTACGCCTTGC
NONE
OsAffx.18813.1.S1_at--874--1812Chr11:6865157..6865181 (25 bp)
ACGCCTTGCCCTGACGATGAAGGAT
NONE
OsAffx.18813.1.S1_at--835--2932Chr11:6688602..6688623 (22 bp)
AAGGCAGCGTCCGAGCTTTTCTAAG
LOC_Os11g12030
OsAffx.18813.1.S1_at--249--5911Chr11:6688590..6688614 (25 bp)
GAGCTTTTCTAAGCACATCCTGTGC
LOC_Os11g12030
OsAffx.18813.1.S1_at--1106--3532Chr11:6864869..6864893 (25 bp)
CATCCTGTGCGTTATAACGGGTCAA
NONE
OsAffx.18813.1.S1_at--972--7591Chr11:6688532..6688556 (25 bp)
GGGCATGCTTTAACGTATGATACTC
LOC_Os11g12030
OsAffx.18813.1.S1_at--1039--8832Chr11:6688515..6688539 (25 bp)
TGATACTCATATAGTGTACTCCCTC
LOC_Os11g12030
OsAffx.18813.1.S1_at--967--2871Chr11:6688224..6688248 (25 bp)
AAGGGCGTCAATAATTCATATCGAA
LOC_Os11g12030
Target Sequence 
TTTAGCAGGAATAGCTTCATTCACAATCAAGAGCCCGTCTGTAACAGCAGATGAGCTGGTGATACTACGCCTTGCCCTGA
CGATGAAGGATGAGAGGTTCAGAGAGGCAGCAAGGCAGCGTCCGAGCTTTTCTAAGCACATCCTGTGCGTTATAACGGGT
CAAACCTATATAATTAAAGATGGGCATGCTTTAACGTATGATACTCATATAGTGTACTCCCTCCGTTTCACAATTAAGAG
AGAAGATATGGAAACACTTAAAAAGGGCGTCAATAATTCATATCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18813.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis