Browse Element(s) Details


OsAffx.18882.1.S1_at

Description tigr:9639.m01517
TID=OsAffx.18882.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1678011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16750NANA11+9254052..9256399transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16760OsAffx.7125.1.S1_at11/1111+9258535..9259433hypothetical protein
LOC_Os11g16770OsAffx.18883.1.S1_at11/1111+9274678..9279976ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
LOC_Os11g16780OsAffx.18882.1.S1_at11/1111+9280427..9283006hypothetical protein
LOC_Os11g16790Os.14491.2.S1_x_at4/1111+9290329..9296048transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16790Os.47463.1.S1_x_at3/1111+9290329..9296048transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16800OsAffx.13740.1.S1_at1/1111+9306074..9307283hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18882.1.S1_at--279--8091Chr11:9280567..9280591 (25 bp)
GGAGCCATCCACCTCGGGAGATTGA
LOC_Os11g16780
OsAffx.18882.1.S1_at--112--571Chr11:9280561..9280585 (25 bp)
ATCCACCTCGGGAGATTGACCGAAG
LOC_Os11g16780
OsAffx.18882.1.S1_at--747--6591Chr11:9280548..9280572 (25 bp)
GATTGACCGAAGTCGCTGGATGCTC
LOC_Os11g16780
OsAffx.18882.1.S1_at--496--5811Chr11:9280544..9280568 (25 bp)
GACCGAAGTCGCTGGATGCTCCGGA
LOC_Os11g16780
OsAffx.18882.1.S1_at--873--2851Chr11:9280539..9280563 (25 bp)
AAGTCGCTGGATGCTCCGGAGGCCA
LOC_Os11g16780
OsAffx.18882.1.S1_at--1109--8551Chr11:9280532..9280556 (25 bp)
TGGATGCTCCGGAGGCCAGCCAGGG
LOC_Os11g16780
OsAffx.18882.1.S1_at--930--7991Chr11:9280503..9280527 (25 bp)
GGAGGCCATCCATGGCTCCGGAGAC
LOC_Os11g16780
OsAffx.18882.1.S1_at--539--3491Chr11:9280493..9280517 (25 bp)
CATGGCTCCGGAGACTGTCCAGGAG
LOC_Os11g16780
OsAffx.18882.1.S1_at--227--971Chr11:9280473..9280497 (25 bp)
AGGAGCTCCGGAAGGCAACTGATGC
LOC_Os11g16780
OsAffx.18882.1.S1_at--996--5291Chr11:9280463..9280487 (25 bp)
GAAGGCAACTGATGCTCCGGAGGTC
LOC_Os11g16780
OsAffx.18882.1.S1_at--783--5151Chr11:9280459..9280483 (25 bp)
GCAACTGATGCTCCGGAGGTCGCCT
LOC_Os11g16780
Target Sequence 
GGAGCCATCCACCTCGGGAGATTGACCGAAGTCGCTGGATGCTCCGGAGGCCAGCCAGGGCCCCGGAGGCCATCCATGGC
TCCGGAGACTGTCCAGGAGCTCCGGAAGGCAACTGATGCTCCGGAGGTCGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18882.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis