Browse Element(s) Details


OsAffx.19723.1.S1_at

Description tigr:9640.m01767
TID=OsAffx.19723.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1800011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17950OsAffx.31792.1.S1_at11/1112+10318250..10319272hypothetical protein
LOC_Os12g17960OsAffx.31793.1.S1_at11/1112+10321824..10322060hypothetical protein
LOC_Os12g17970NANA12+10325539..10326192retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17980NANA12+10327037..10329166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17990Os.27691.2.S1_x_at2/1112+10330429..10331255retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g18000OsAffx.19723.1.S1_at11/1112+10336137..10336340hypothetical protein
LOC_Os12g18010Os.47463.1.S1_x_at3/1112+10346128..10356309transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g18010OsAffx.24649.3.S1_at2/1112+10346128..10356309transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g18010OsAffx.24649.1.S1_at2/1112+10346128..10356309transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g18010Os.14491.2.S1_x_at2/1112+10346128..10356309transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g18020NANA12+10357863..10361146transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19723.1.S1_at--1151--7971Chr12:10336217..10336241 (25 bp)
GGATGAAGGTTTAGTGACCCCGACT
LOC_Os12g18000
OsAffx.19723.1.S1_at--185--11Chr12:10336219..10336243 (25 bp)
ATGAAGGTTTAGTGACCCCGACTAT
LOC_Os12g18000
OsAffx.19723.1.S1_at--371--5311Chr12:10336221..10336245 (25 bp)
GAAGGTTTAGTGACCCCGACTATGA
LOC_Os12g18000
OsAffx.19723.1.S1_at--299--10451Chr12:10336227..10336251 (25 bp)
TTAGTGACCCCGACTATGACGACAA
LOC_Os12g18000
OsAffx.19723.1.S1_at--202--7371Chr12:10336230..10336254 (25 bp)
GTGACCCCGACTATGACGACAACTA
LOC_Os12g18000
OsAffx.19723.1.S1_at--121--5811Chr12:10336232..10336256 (25 bp)
GACCCCGACTATGACGACAACTAGG
LOC_Os12g18000
OsAffx.19723.1.S1_at--757--4191Chr12:10336235..10336259 (25 bp)
CCCGACTATGACGACAACTAGGAAT
LOC_Os12g18000
OsAffx.19723.1.S1_at--76--5711Chr12:10336238..10336262 (25 bp)
GACTATGACGACAACTAGGAATTGG
LOC_Os12g18000
OsAffx.19723.1.S1_at--982--5611Chr12:10336247..10336271 (25 bp)
GACAACTAGGAATTGGAAGTATCAT
LOC_Os12g18000
OsAffx.19723.1.S1_at--326--6891Chr12:10336265..10336289 (25 bp)
GTATCATGGAAATATGATGAGGCCA
LOC_Os12g18000
OsAffx.19723.1.S1_at--349--8431Chr12:10336285..10336309 (25 bp)
GGCCATGGAGGAAGTATGTTGTCGA
LOC_Os12g18000
Target Sequence 
GGATGAAGGTTTAGTGACCCCGACTATGACGACAACTAGGAATTGGAAGTATCATGGAAATATGATGAGGCCATGGAGGA
AGTATGTTGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19723.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis