Browse Element(s) Details


OsAffx.20105.1.S1_at

Description tigr:9640.m04286
TID=OsAffx.20105.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4354011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43520Os.9668.1.S1_at11/1112+26963921..26968127CbbY protein, putative, expressed
LOC_Os12g43530OsAffx.7880.1.S1_at11/1112+26973985..26976015No apical meristem protein
LOC_Os12g43540OsAffx.20105.1.S1_at11/1112+26981668..26982581hypothetical protein
LOC_Os12g43550Os.11076.1.S1_at11/1112+26988371..26991602Ras-related protein RHN1, putative, expressed
LOC_Os12g43560Os.19944.1.S1_at10/1112+26991714..26996384zinc finger family protein, putative, expressed
LOC_Os12g43564NANA12+26999080..27001360hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20105.1.S1_at--649--4151Chr12:26982435..26982459 (25 bp)
CGCCCGTTTAGCTGCGGCGGCTGAC
LOC_Os12g43540
OsAffx.20105.1.S1_at--637--6251Chr12:26981715..26981739 (25 bp)
GATGGTAAGTGCGTGACTGCCGAGG
LOC_Os12g43540
OsAffx.20105.1.S1_at--870--811Chr12:26981714..26981738 (25 bp)
ATGGTAAGTGCGTGACTGCCGAGGA
LOC_Os12g43540
OsAffx.20105.1.S1_at--570--9771Chr12:26981710..26981734 (25 bp)
TAAGTGCGTGACTGCCGAGGACGTA
LOC_Os12g43540
OsAffx.20105.1.S1_at--1097--2851Chr12:26981709..26981733 (25 bp)
AAGTGCGTGACTGCCGAGGACGTAC
LOC_Os12g43540
OsAffx.20105.1.S1_at--17--9151Chr12:26981706..26981730 (25 bp)
TGCGTGACTGCCGAGGACGTACGTC
LOC_Os12g43540
OsAffx.20105.1.S1_at--816--3991Chr12:26981704..26981728 (25 bp)
CGTGACTGCCGAGGACGTACGTCGA
LOC_Os12g43540
OsAffx.20105.1.S1_at--814--8931Chr12:26981702..26981726 (25 bp)
TGACTGCCGAGGACGTACGTCGAGT
LOC_Os12g43540
OsAffx.20105.1.S1_at--537--1971Chr12:26981700..26981724 (25 bp)
ACTGCCGAGGACGTACGTCGAGTCA
LOC_Os12g43540
OsAffx.20105.1.S1_at--159--3831Chr12:26981699..26981723 (25 bp)
CTGCCGAGGACGTACGTCGAGTCAG
LOC_Os12g43540
OsAffx.20105.1.S1_at--952--9171Chr12:26981698..26981722 (25 bp)
TGCCGAGGACGTACGTCGAGTCAGA
LOC_Os12g43540
Target Sequence 
CGCCCGTTTAGCTGCGGCGGCTGACGTCTCCGACCGCCTCTCCATCCGCTACAGCAGCGAGCCCCCAGATGATGGTAAGT
GCGTGACTGCCGAGGACGTACGTCGAGTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis