Browse Element(s) Details


OsAffx.20733.1.S1_x_at

Description gb:NM_194901.1
DB_XREF= gi:37531161
TID=OsAffx.20733.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0034B05.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0639011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g0636010/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g111402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g111101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g116301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g036801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g159001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g225201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g113501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g262801/11hypothetical protein
LOC_Os02g386501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g168701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g285901/11retrotransposon protein, putative, unclassified
LOC_Os09g132201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g238701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g149801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g265801/11retrotransposon protein, putative, unclassified
LOC_Os03g213401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g230801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g164501/11transposon protein, putative, unclassified
LOC_Os04g300801/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06330NANA10+3241976..3246490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06340OsAffx.22699.1.S1_x_at1/1110+3249378..3254204retrotransposon protein, putative, unclassified
LOC_Os10g06350NANA10+3254720..3257910hypothetical protein
LOC_Os10g06360OsAffx.20733.1.S1_x_at10/1110+3261595..3262023retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06370NANA10+3262723..3263964retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06380NANA10+3264301..3267369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06390OsAffx.20733.1.S1_x_at11/1110+3268068..3268496retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06400OsAffx.2494.1.S1_at1/1110+3272177..3275367hypothetical protein
LOC_Os10g06410OsAffx.22699.1.S1_x_at1/1110+3275883..3280709retrotransposon protein, putative, unclassified
LOC_Os10g06420NANA10+3283233..3283808retrotransposon protein, putative, unclassified
LOC_Os10g06430OsAffx.22385.1.S1_x_at3/1110+3284938..3290685retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06430Os.46862.1.S1_at1/1110+3284938..3290685retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20733.1.S1_x_at--298--9076Chr10:3261674..3261698 (25 bp)
TGCTTCAGCACGAACGGAGGGCACC
LOC_Os10g06360
OsAffx.20733.1.S1_x_at--446--33334Chr12:5998511..5998748 (25 bp)
CACCAACGGGTAGCGGACAGCACGG
LOC_Os12g11140
OsAffx.20733.1.S1_x_at--521--5652Chr10:3261710..3261734 (25 bp)
GACAGCACGGCGATCTCACCGGCGA
LOC_Os10g06360
OsAffx.20733.1.S1_x_at--801--455Chr10:3261722..3261746 (25 bp)
ATCTCACCGGCGACCAAAGCGACGG
LOC_Os10g06360
OsAffx.20733.1.S1_x_at--808--18726Chr10:3261773..3261797 (25 bp)
ACGAGGTTGAAACGGCGGCGCTCTT
LOC_Os10g06360
OsAffx.20733.1.S1_x_at--932--40513Chr10:3261774..3261798 (25 bp)
CGAGGTTGAAACGGCGGCGCTCTTC
LOC_Os10g06360
OsAffx.20733.1.S1_x_at--422--41396Chr12:5998607..5998631 (25 bp)
CGCTCTTCGGCTTGACGACGGCGAC
LOC_Os12g11140
OsAffx.20733.1.S1_x_at--927--3618Chr10:3261801..3261825 (25 bp)
CTTGACGACGGCGACGGTGCTCTGG
LOC_Os10g06360
OsAffx.20733.1.S1_x_at--876--3972Chr12:23620217..23620291 (25 bp)
CGGTGCTCTGGCGGTCTTTGGCGGT
NONE
OsAffx.20733.1.S1_x_at--530--5653Chr10:3261867..3261891 (25 bp)
GACTTGGCGACCCCGACGGCGGTCT
LOC_Os10g06360
OsAffx.20733.1.S1_x_at--35--47114Chr12:21487390..21487409 (20 bp)
GCGGCGACGGCGACGCTAGGGCACA
NONE
Target Sequence 
TGCTTCAGCACGAACGGAGGGCACCAACGGGTAGCGGACAGCACGGCGATCTCACCGGCGACCAAAGCGACGGCGGAAGA
CCAACGGACGGCGACGACGACGAGGTTGAAACGGCGGCGCTCTTCGGCTTGACGACGGCGACGGTGCTCTGGCGGTCTTT
GGCGGTGGCGAAGCGGCGGACGAGGACGGCGACGACTTGGCGACCCCGACGGCGGTCTTCCCGAGCGACGACGATGACTG
GAACGGCGGCGGCGCACGGCTGGAGCGACGGCGGCGACGGCGACGCTAGGGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20733.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis