Browse Element(s) Details


OsAffx.20756.1.S1_at

Description tigr:9638.m00396
TID=OsAffx.20756.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0485011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04840OsAffx.30282.1.S1_at11/1110+2323745..2324838hypothetical protein
LOC_Os10g04850OsAffx.20756.1.S1_at11/1110+2334552..2338653F-box domain containing protein
LOC_Os10g04860Os.8217.1.S1_at11/1110+2343001..2352865Aldehyde oxidase 1, putative, expressed
LOC_Os10g04870NANA10+2354227..2354472hypothetical protein
LOC_Os10g04880OsAffx.30284.2.S1_at11/1110+2356330..2357124hypothetical protein
LOC_Os10g04890Os.46727.1.S1_at10/1110+2358807..2362662expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20756.1.S1_at--233--5331Chr10:2335117..2335141 (25 bp)
GAAGTGCTCCAGATGCCTGCTGTAA
LOC_Os10g04850
OsAffx.20756.1.S1_at--499--3871Chr10:2335098..2335122 (25 bp)
CTGTAACGTCGCAGGCAGCTGTGTA
LOC_Os10g04850
OsAffx.20756.1.S1_at--782--7731Chr10:2335073..2335097 (25 bp)
GGTGGAGGTGTCGTATTGCCACAAC
LOC_Os10g04850
OsAffx.20756.1.S1_at--1014--2931Chr10:2335035..2335059 (25 bp)
AAGGCTCAAACTTCATGGCATGGAT
LOC_Os10g04850
OsAffx.20756.1.S1_at--448--6831Chr10:2334933..2334957 (25 bp)
GTTTCACAACAATGGTATTCCTGGA
LOC_Os10g04850
OsAffx.20756.1.S1_at--1114--2711Chr10:2334904..2334928 (25 bp)
AAGCAGATTGCCCATATTTCCGTCG
LOC_Os10g04850
OsAffx.20756.1.S1_at--953--3571Chr10:2334892..2334916 (25 bp)
CATATTTCCGTCGTGCCATGGAGCT
LOC_Os10g04850
OsAffx.20756.1.S1_at--1024--4931Chr10:2334858..2334882 (25 bp)
GCTTGGTTTCAATGTGGCTGTTCCT
LOC_Os10g04850
OsAffx.20756.1.S1_at--1028--8331Chr10:2334843..2334867 (25 bp)
GGCTGTTCCTACTGGTGCCGAAATA
LOC_Os10g04850
OsAffx.20756.1.S1_at--241--1311Chr10:2334819..2334843 (25 bp)
AGATGGCGCTTATCTTGATGCCGAT
LOC_Os10g04850
OsAffx.20756.1.S1_at--881--6491Chr10:2334737..2334761 (25 bp)
GATATGCCCTTGATCACATGGACCA
LOC_Os10g04850
Target Sequence 
GAAGTGCTCCAGATGCCTGCTGTAACGTCGCAGGCAGCTGTGTAGGTGGAGGTGTCGTATTGCCACAACCATCCAGCAAA
ACAAGGCTCAAACTTCATGGCATGGATGCAGATGATGTGTACCGTGGGGCATCGGCACAAACTGAAATTGGCACATCAGA
ACTAAGAAAAGCTTGGGCAGAATGGTTTCACAACAATGGTATTCCTGGAATAAAAGCAGATTGCCCATATTTCCGTCGTG
CCATGGAGCTGACACAACAGCTTGGTTTCAATGTGGCTGTTCCTACTGGTGCCGAAATAGATGGCGCTTATCTTGATGCC
GATGAAGAAGAAATAAATGTTGATGCCATCAATGCTGAAAAGTCATGTGAAGCAGTTCTTGATATGCCCTTGATCACATG
GACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20756.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis